Non-Coding RNA Search

Ss1.1-recc2806c_e17.5

Sequence:


               
               GCGACCCCAAAAATTTAACCATTAAGAAACAAAAAATTTAATATATTATAGCCCTATGTA
CGAAAACCTCGTGCCGAATTCGGCACGAGGGGAAGCTTTAGCTTCTCCCTGCTTCTTCTC
ACCACCTCCTGCCTCTTAGCGGAAGCGGTAGGCAGTTTGCAGCGGGGGCTTCTCTCGCGC
CTGGGGCGCTGTTCCTCTCTTCCCCCCAGACTGTTTTCCTTAAGAATGGATCCTGGTGGG
CAGCGCTTTGAAGGCTCGATGCTGGATCCTGTGTGGCACGGCCAGCACATGGGCAGCGCC
AGGCCTCCGGCTCTGCTGGGCACCCCCCTTACCTGGTTCCTGGCCCCAGGCGGTCTCCGG
CGGAGTCCCTGTGCTGGTGTGCTGGCGATGAGTAAGAGCGGCGGAAAGTTGGGCTTTCTG
TCCAAGGCGAAGGGCCATGTCGTTTTCATTTGCCAGCAGGAAGAATGATAGTTGTCTTTG
CCTGACTGCCTTCGTTGTCGCTTCGTGCACGAGACAGCACTGTGTTTTCAGCTGGTTCGT
CACACTGTCTTTGCAGTGATGTTCTAAGTGCAAGAAATCACTTCGCTTTAGAAGCCGAGT
GACTTGGTCTCATTTATGGGAAGACCCCTTTTAGCAGATCCAGACTTCAGAGCATCAGCA
GGTCTGTTTGGATGCGTGAGGGTCCTTAGGGACAGCCGCTGCGGATGCAGTGTTCACTTA
AGCTTTGTCTTCTTAAAAGTTATCAATGTGAATGTCATAATTATATATATATTTTTTGTG
GAAATTTTCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGACCCCAAAAATTTAACCATTAAGAAACAAAAAATTTAATATATTATAGCCCTATGTA
CGAAAACCTCGTGCCGAATTCGGCACGAGGGGAAGCTTTAGCTTCTCCCTGCTTCTTCTC
ACCACCTCCTGCCTCTTAGCGGAAGCGGTAGGCAGTTTGCAGCGGGGGCTTCTCTCGCGC
CTGGGGCGCTGTTCCTCTCTTCCCCCCAGACTGTTTTCCTTAAGAATGGATCCTGGTGGG
CAGCGCTTTGAAGGCTCGATGCTGGATCCTGTGTGGCACGGCCAGCACATGGGCAGCGCC
AGGCCTCCGGCTCTGCTGGGCACCCCCCTTACCTGGTTCCTGGCCCCAGGCGGTCTCCGG
CGGAGTCCCTGTGCTGGTGTGCTGGCGATGAGTAAGAGCGGCGGAAAGTTGGGCTTTCTG
TCCAAGGCGAAGGGCCATGTCGTTTTCATTTGCCAGCAGGAAGAATGATAGTTGTCTTTG
CCTGACTGCCTTCGTTGTCGCTTCGTGCACGAGACAGCACTGTGTTTTCAGCTGGTTCGT
CACACTGTCTTTGCAGTGATGTTCTAAGTGCAAGAAATCACTTCGCTTTAGAAGCCGAGT
GACTTGGTCTCATTTATGGGAAGACCCCTTTTAGCAGATCCAGACTTCAGAGCATCAGCA
GGTCTGTTTGGATGCGTGAGGGTCCTTAGGGACAGCCGCTGCGGATGCAGTGTTCACTTA
AGCTTTGTCTTCTTAAAAGTTATCAATGTGAATGTCATAATTATATATATATTTTTTGTG
GAAATTTTCTCC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               91-792, gnl|bosTau2|chr21 (46874069-46874756)
               

               
               91-792, gnl|Hg17|chr14 (102264563-102265221)
               

               
               91-792, gnl|Mm7|chr12 (108630281-108630946)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               91-792, gnl|bosTau2|chr21 (46874069-46874756)
               

               
               91-792, gnl|Hg17|chr14 (102264563-102265221)
               

               
               91-792, gnl|Mm7|chr12 (108630281-108630946)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               pro (0.512033)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)

	91-792, gnl\|bosTau2\|chr21 (46874069-46874756)
	91-792, gnl\|Hg17\|chr14 (102264563-102265221)
	91-792, gnl\|Mm7\|chr12 (108630281-108630946)