Non-Coding RNA Search

Ss1.1-recc2806c_f14.5

Sequence:


               
               GGCCGCTCAACAACCTGGGGGAGAGCCTCATGCAGTTCAGCAAGCCTCGCAAGCTTGTCA
ACACCGTCAATCCGGGGGCCCGCTTCATGACTACTGCCATGTATGATGCCCGTGAGGCTA
TCATCCCCGGATCTGTCTATGACCGCAGCAGCCAGGGGCGGCCCTCAAACATGTACTTCC
AGACCCATGACCAGATTAGCATGATCAGCGCAGGTCCCAGCCATGTGGCTGCCATGAACA
TTCCCATCCCCTTCAACCTGGTTATGCCGCCCATGCCGCCACCGGGGTACTTTGGACAAG
CTAACGGGCCAGCCACAGGCCGGGGCACCCCAAAAGGCAAGACTGGTCGTGGAGGACGCC
AGAAGAACCGCTTTGGGCTTCCAGGCCCCAGCCAGACAAATCTCCCCAACAGCCAGGCCA
GCCAGGATGTGGCATCACAGCCCTTCTCACAGGGCGCCCTGACCCAGGGCTACATCTCCA
TGAGCCAGCCCTCCCAGATGAGCCAGCCCGGCCTCTCCCAGCCTGAGCTGTCCCAGGACA
GTTACCTTGGAGATGAGTTTAAGTCCCAGATCGATGTGGCGCTGTCACAAGATTCCACAT
ACCAGGGAGAGCGGGCGTACCAACACGGCGGAGTGACGGGGCTGTCCCAGTACTAGAAGG
TGGCGGCAGAAGAGCTAAGCTACGTGGCTTAGTCCATCAGCATCTTATTCTGGGTAATAA
AAAATAAAAATAAATGGATACCTGTTTTCCACTGCTAAAACTGAAGCACCACTGTGAGCA
ACAGGAGAGGGAGAGGAGCACCCGAAGGAGAGAGGAGCCCGAGACAGAGCGAGCGCCCAC
TGCTGGCACGTGGCGGCGAGGAGAAGGAGAAGGGAGAGCGGGAGGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCGCTCAACAACCTGGGGGAGAGCCTCATGCAGTTCAGCAAGCCTCGCAAGCTTGTCA
ACACCGTCAATCCGGGGGCCCGCTTCATGACTACTGCCATGTATGATGCCCGTGAGGCTA
TCATCCCCGGATCTGTCTATGACCGCAGCAGCCAGGGGCGGCCCTCAAACATGTACTTCC
AGACCCATGACCAGATTAGCATGATCAGCGCAGGTCCCAGCCATGTGGCTGCCATGAACA
TTCCCATCCCCTTCAACCTGGTTATGCCGCCCATGCCGCCACCGGGGTACTTTGGACAAG
CTAACGGGCCAGCCACAGGCCGGGGCACCCCAAAAGGCAAGACTGGTCGTGGAGGACGCC
AGAAGAACCGCTTTGGGCTTCCAGGCCCCAGCCAGACAAATCTCCCCAACAGCCAGGCCA
GCCAGGATGTGGCATCACAGCCCTTCTCACAGGGCGCCCTGACCCAGGGCTACATCTCCA
TGAGCCAGCCCTCCCAGATGAGCCAGCCCGGCCTCTCCCAGCCTGAGCTGTCCCAGGACA
GTTACCTTGGAGATGAGTTTAAGTCCCAGATCGATGTGGCGCTGTCACAAGATTCCACAT
ACCAGGGAGAGCGGGCGTACCAACACGGCGGAGTGACGGGGCTGTCCCAGTACTAGAAGG
TGGCGGCAGAAGAGCTAAGCTACGTGGCTTAGTCCATCAGCATCTTATTCTGGGTAATAA
AAAATAAAAATAAATGGATACCTGTTTTCCACTGCTAAAACTGAAGCACCACTGTGAGCA
ACAGGAGAGGGAGAGGAGCACCCGAAGGAGAGAGGAGCCCGAGACAGAGCGAGCGCCCAC
TGCTGGCACGTGGCGGCGAGGAGAAGGAGAAGGGAGAGCGGGAGGTGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61859430|ref|XP_600529.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61859430|ref|XP_600529.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               658-776, + strand, RNAz p=0.881958

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               658-776, + strand, RNAz p=0.881958

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK125797, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK125797, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               140-634, gnl|bosTau2|chr7 (23845205-23845709)
               

               
               140-634, gnl|Hg17|chr19 (18837097-18837977)
               

               
               140-634, gnl|Mm7|chr8 (68788639-68787824)
               


               
               658-888, gnl|bosTau2|chr7 (2312948-2313175)
               

               
               658-888, gnl|Hg17|chr19 (18838328-18838543)
               

               
               658-888, gnl|Mm7|chr8 (68787687-68787482)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               140-634, gnl|bosTau2|chr7 (23845205-23845709)
               

               
               140-634, gnl|Hg17|chr19 (18837097-18837977)
               

               
               140-634, gnl|Mm7|chr8 (68788639-68787824)
               


               
               658-888, gnl|bosTau2|chr7 (2312948-2313175)
               

               
               658-888, gnl|Hg17|chr19 (18838328-18838543)
               

               
               658-888, gnl|Mm7|chr8 (68787687-68787482)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)
               

               
               ecc (0.115035)

	140-634, gnl\|bosTau2\|chr7 (23845205-23845709)
	140-634, gnl\|Hg17\|chr19 (18837097-18837977)
	140-634, gnl\|Mm7\|chr8 (68788639-68787824)

	658-888, gnl\|bosTau2\|chr7 (2312948-2313175)
	658-888, gnl\|Hg17\|chr19 (18838328-18838543)
	658-888, gnl\|Mm7\|chr8 (68787687-68787482)