Non-Coding RNA Search

Ss1.1-recc2806c_p7.5

Sequence:


               
               GTTTTATATACTAAATCAAATCTTTAAAAAAAAAACTGTCAACCATTTCATATATCCCAC
TACTCAAGGTATCCATGGAACACGAAAGAAAAACATTTATGCAGAGGAAAAACAGAAAAT
CATCCCCCAAAACACACATACACGTTCACACATTGGGGGGGAAAAGGAAGAAATCATTTT
CCTCACCATAGACTTGATCCCATTCTTACAACCCATCCTTAATAACTTGGTGTGTATAAA
ATATGCAAACATGTCACAACTGTTCTATGTCATTTCAAAACACTTTATCAATATCAGAAG
AAACTTACCAATGGGTGGGAAAGGGTCATTATGTGAAAATATGAAAAAATAGCCATATTA
ATTTTTTACCTGCAGTTTGCCTCAGCAACAAAGAAAAAGTGAATTTCTAATGCTGAAGAT
AAAGTAAGCTAAAGTACCAGCAGAAGCCTTGGCTATTTATAGCAATTCTGACAATAGTTT
TATAAGAATATGGAAAAGAACAGAATCACTTGAAAATGGATGCCAGTCATCTTTGTTCCC
ACTACTGAATTCATATGAAGTGGTGGCAAGAAAGCAGAGGGATGATCTGAGAATTTTTTA
AAGATGATCTAATGAGAAGAAGCACAATTTTGATTGTGATGAGTCACTTTCTGTAAACAA
TTGCTGTCTAGCTTTACCCTTATACTTTAACTGTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTATATACTAAATCAAATCTTTAAAAAAAAAACTGTCAACCATTTCATATATCCCAC
TACTCAAGGTATCCATGGAACACGAAAGAAAAACATTTATGCAGAGGAAAAACAGAAAAT
CATCCCCCAAAACACACATACACGTTCACACATTGGGGGGGAAAAGGAAGAAATCATTTT
CCTCACCATAGACTTGATCCCATTCTTACAACCCATCCTTAATAACTTGGTGTGTATAAA
ATATGCAAACATGTCACAACTGTTCTATGTCATTTCAAAACACTTTATCAATATCAGAAG
AAACTTACCAATGGGTGGGAAAGGGTCATTATGTGAAAATATGAAAAAATAGCCATATTA
ATTTTTTACCTGCAGTTTGCCTCAGCAACAAAGAAAAAGTGAATTTCTAATGCTGAAGAT
AAAGTAAGCTAAAGTACCAGCAGAAGCCTTGGCTATTTATAGCAATTCTGACAATAGTTT
TATAAGAATATGGAAAAGAACAGAATCACTTGAAAATGGATGCCAGTCATCTTTGTTCCC
ACTACTGAATTCATATGAAGTGGTGGCAAGAAAGCAGAGGGATGATCTGAGAATTTTTTA
AAGATGATCTAATGAGAAGAAGCACAATTTTGATTGTGATGAGTCACTTTCTGTAAACAA
TTGCTGTCTAGCTTTACCCTTATACTTTAACTGTAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               476-573, + strand, RNAz p=0.535125

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               476-573, + strand, RNAz p=0.535125

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-696, gnl|bosTau2|chr7 (56594060-56594733)
               

               
               2-696, gnl|Hg17|chr5 (88051932-88051241)
               

               
               2-696, gnl|Mm7|chr13 (80739922-80740642)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-696, gnl|bosTau2|chr7 (56594060-56594733)
               

               
               2-696, gnl|Hg17|chr5 (88051932-88051241)
               

               
               2-696, gnl|Mm7|chr13 (80739922-80740642)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	2-696, gnl\|bosTau2\|chr7 (56594060-56594733)
	2-696, gnl\|Hg17\|chr5 (88051932-88051241)
	2-696, gnl\|Mm7\|chr13 (80739922-80740642)