Non-Coding RNA Search

Ss1.1-recc2806c_p8.5

Sequence:


               
               GCATGGATGTTCAGAGGGATCCACTCCTCCAGTTTCCATGAGCCAGAGTCAAGGAAAGCA
GAGACTTGATGGTGAAAGGCAGTGAGAAGGGACGGAGAGCCCAGAGTACTGGGTTATAGC
CCCAGCTCTGCCCCCAACTGGCTGTGTAACATTTGACAAATGACTTTCCCTCTCTGGGCC
TCAGTTTCCCCATCTGTAAAAGAAAGGCATCAGATCCCCCTCAGGGTCCTTCCAGCCCCA
GCGTTCAGTGCTTCCATTGCTAGCAGCCTCTCCCTGGCGCTCACAGGGCTCATTGTCCTC
CTTCTCCCAGGCTCCCTCTCCTGGGGACTCTCCACCAGAAAAAGGCACCCAGAGAAGCCC
TGAGAGGGATTCCAAGGGAGCAACTGGGAAGTGTCCATCTTGCCAGTTGGATCCTGAAAG
CACACTCCTATGTCTCTCAACAGTGCATGTAGAGGATACTATATTTTGTATATTTTATAT
CACAAGCTTCACTCCTCTGTAAGGGGCCTCTTCACTCTGTTTCTCCTGTCAGGGGACTAA
AGTGGAAATAAACCCCCTGTGGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCATGGATGTTCAGAGGGATCCACTCCTCCAGTTTCCATGAGCCAGAGTCAAGGAAAGCA
GAGACTTGATGGTGAAAGGCAGTGAGAAGGGACGGAGAGCCCAGAGTACTGGGTTATAGC
CCCAGCTCTGCCCCCAACTGGCTGTGTAACATTTGACAAATGACTTTCCCTCTCTGGGCC
TCAGTTTCCCCATCTGTAAAAGAAAGGCATCAGATCCCCCTCAGGGTCCTTCCAGCCCCA
GCGTTCAGTGCTTCCATTGCTAGCAGCCTCTCCCTGGCGCTCACAGGGCTCATTGTCCTC
CTTCTCCCAGGCTCCCTCTCCTGGGGACTCTCCACCAGAAAAAGGCACCCAGAGAAGCCC
TGAGAGGGATTCCAAGGGAGCAACTGGGAAGTGTCCATCTTGCCAGTTGGATCCTGAAAG
CACACTCCTATGTCTCTCAACAGTGCATGTAGAGGATACTATATTTTGTATATTTTATAT
CACAAGCTTCACTCCTCTGTAAGGGGCCTCTTCACTCTGTTTCTCCTGTCAGGGGACTAA
AGTGGAAATAAACCCCCTGTGGAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-159, + strand, RNAz p=0.997461

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-159, + strand, RNAz p=0.997461

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_139125, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_139125, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-564, gnl|bosTau2|chr1 (50015931-50015385)
               

               
               1-564, gnl|Hg17|chr3 (188435116-188434580)
               

               
               1-564, gnl|Mm7|chr16 (23127480-23126983)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-564, gnl|bosTau2|chr1 (50015931-50015385)
               

               
               1-564, gnl|Hg17|chr3 (188435116-188434580)
               

               
               1-564, gnl|Mm7|chr16 (23127480-23126983)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cli (0.152812)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.152812)
               

               
               ecc (0.115035)

	1-564, gnl\|bosTau2\|chr1 (50015931-50015385)
	1-564, gnl\|Hg17\|chr3 (188435116-188434580)
	1-564, gnl\|Mm7\|chr16 (23127480-23126983)