Ss1.1-recc2807c_f8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCAGCAGGTGGCAGAGAAGCATGAACTAGGACGACTACAGTACTCACTGGATTATGATT TCCAGAGTGGCCAGCTGCTGGTGGGCATCCTGCAAGCTGAGGGACTGGCAGCCTTGGACC TAGGTGGCTCCTCTGACCCCTACGTGCGGGTTTACCTGCTGCCAGACAAACGGAGGCGGT ATGAGACAAAGGTGCATCGGCAGACGCTGAACCCACACTTTGGGGAGAACTTTGCTTTCA AGGTTCCCTACGTGGAGCTGGGAGGCAGGGTCCTGGTCATGGCAGTGTACGACTTCGACC GCTTCTCCCGCAACGACGCCATCGGGGAGGTGCGGGTCCCCATGAGCTCTGTGGACTTGG GGCGGCCGGTGCTGGCCTGGCGGGAGCTGCAGGCCGCTCCTCGGGAGGAGCAGGAGAAAC TAGGTGACATCTGCTTCTCCCTCCGCTATGTCCCCACGGCCGGGAAACTCACTGTCATCG TCCTGGAGGCTAAAAACCTGAAGAAGATGGACGTGGGAGGGCTGTCAGATCCCTACGTCA AGGTGCACCTGCTGCAGGGCGGCAAAAAGGTGCGGAAGAAGAAAACGACCATCAAGAAGA ACACCCTGAACCCCTATTACAACGAGGCCTTCAGCTTCGAGGTGCCCTGTGACCAGGTCC AGAAGGTCCAGGTGGAGCTGACTGTGCTGGACTACGACAAGCTGGGCAAGAACGAGGCCA TCGGGAGGGTGGCTGTAGGGGCGGCGGCCGGGGGGGCTGGCCTGCGGCACTGGGCAGACA TGCTGGCCAACCCCCGGCGGCCCATCGCCCAGTGGCACTCGCTGCGGCCCCCTGACCGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCAGCAGGTGGCAGAGAAGCATGAACTAGGACGACTACAGTACTCACTGGATTATGATT TCCAGAGTGGCCAGCTGCTGGTGGGCATCCTGCAAGCTGAGGGACTGGCAGCCTTGGACC TAGGTGGCTCCTCTGACCCCTACGTGCGGGTTTACCTGCTGCCAGACAAACGGAGGCGGT ATGAGACAAAGGTGCATCGGCAGACGCTGAACCCACACTTTGGGGAGAACTTTGCTTTCA AGGTTCCCTACGTGGAGCTGGGAGGCAGGGTCCTGGTCATGGCAGTGTACGACTTCGACC GCTTCTCCCGCAACGACGCCATCGGGGAGGTGCGGGTCCCCATGAGCTCTGTGGACTTGG GGCGGCCGGTGCTGGCCTGGCGGGAGCTGCAGGCCGCTCCTCGGGAGGAGCAGGAGAAAC TAGGTGACATCTGCTTCTCCCTCCGCTATGTCCCCACGGCCGGGAAACTCACTGTCATCG TCCTGGAGGCTAAAAACCTGAAGAAGATGGACGTGGGAGGGCTGTCAGATCCCTACGTCA AGGTGCACCTGCTGCAGGGCGGCAAAAAGGTGCGGAAGAAGAAAACGACCATCAAGAAGA ACACCCTGAACCCCTATTACAACGAGGCCTTCAGCTTCGAGGTGCCCTGTGACCAGGTCC AGAAGGTCCAGGTGGAGCTGACTGTGCTGGACTACGACAAGCTGGGCAAGAACGAGGCCA TCGGGAGGGTGGCTGTAGGGGCGGCGGCCGGGGGGGCTGGCCTGCGGCACTGGGCAGACA TGCTGGCCAACCCCCGGCGGCCCATCGCCCAGTGGCACTCGCTGCGGCCCCCTGACCGGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 699-818, + strand, RNAz p=0.661639 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 699-818, + strand, RNAz p=0.661639 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 27-356, gnl|bosTau2|chr3 (10730571-10730236) | |
| 27-356, gnl|Hg17|chr1 (152651266-152651601) | |
| 27-356, gnl|Mm7|chr3 (88875916-88875581) | |
| 68-255, gnl|bosTau2|chr18 (54840035-54839849) | |
| 68-255, gnl|Hg17|chr19 (60379074-60378877) | |
| 68-255, gnl|Mm7|chr7 (4116303-4116111) | |
| 409-528, gnl|bosTau2|chr18 (54839187-54839068) | |
| 409-528, gnl|canFam2|chr1 (105538152-105538007) | |
| 409-528, gnl|danRer3|chr24 (5410749-5410880) | |
| 409-528, gnl|dasNov1|scaffold_197551 (199-342) | |
| 409-528, gnl|echTel1|scaffold_321151 (6059-5911) | |
| 409-528, gnl|fr1|chrUn (178112580-178112438) | |
| 409-528, gnl|galGal2|chr5 (11666355-11666498) | |
| 409-528, gnl|hg17|chr19 (60378061-60378203) | |
| 409-528, gnl|Hg17|chr19 (60378181-60378062) | |
| 409-528, gnl|loxAfr1|scaffold_67419 (10909-11038) | |
| 409-528, gnl|mm7|chr7 (4115226-4115371) | |
| 409-528, gnl|Mm7|chr7 (4115346-4115227) | |
| 409-528, gnl|monDom2|scaffold_13 (2450976-2451123) | |
| 409-528, gnl|oryCun1|scaffold_197024 (4354-4222) | |
| 409-528, gnl|panTro1|chr20 (57802013-57802155) | |
| 409-528, gnl|rheMac2|chr19 (61182814-61182959) | |
| 409-528, gnl|rn3|chr1 (68088806-68088661) | |
| 409-528, gnl|tetNig1|chr9 (8065365-8065521) | |
| 409-528, gnl|xenTro1|scaffold_374 (564814-564939) | |
| 659-838, gnl|bosTau2|chr18 (54838101-54837922) | |
| 659-838, gnl|Hg17|chr19 (60376868-60376689) | |
| 659-838, gnl|Mm7|chr7 (4113700-4113523) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 27-356, gnl|bosTau2|chr3 (10730571-10730236) | |
| 27-356, gnl|Hg17|chr1 (152651266-152651601) | |
| 27-356, gnl|Mm7|chr3 (88875916-88875581) | |
| 68-255, gnl|bosTau2|chr18 (54840035-54839849) | |
| 68-255, gnl|Hg17|chr19 (60379074-60378877) | |
| 68-255, gnl|Mm7|chr7 (4116303-4116111) | |
| 409-528, gnl|bosTau2|chr18 (54839187-54839068) | |
| 409-528, gnl|canFam2|chr1 (105538152-105538007) | |
| 409-528, gnl|danRer3|chr24 (5410749-5410880) | |
| 409-528, gnl|dasNov1|scaffold_197551 (199-342) | |
| 409-528, gnl|echTel1|scaffold_321151 (6059-5911) | |
| 409-528, gnl|fr1|chrUn (178112580-178112438) | |
| 409-528, gnl|galGal2|chr5 (11666355-11666498) | |
| 409-528, gnl|hg17|chr19 (60378061-60378203) | |
| 409-528, gnl|Hg17|chr19 (60378181-60378062) | |
| 409-528, gnl|loxAfr1|scaffold_67419 (10909-11038) | |
| 409-528, gnl|mm7|chr7 (4115226-4115371) | |
| 409-528, gnl|Mm7|chr7 (4115346-4115227) | |
| 409-528, gnl|monDom2|scaffold_13 (2450976-2451123) | |
| 409-528, gnl|oryCun1|scaffold_197024 (4354-4222) | |
| 409-528, gnl|panTro1|chr20 (57802013-57802155) | |
| 409-528, gnl|rheMac2|chr19 (61182814-61182959) | |
| 409-528, gnl|rn3|chr1 (68088806-68088661) | |
| 409-528, gnl|tetNig1|chr9 (8065365-8065521) | |
| 409-528, gnl|xenTro1|scaffold_374 (564814-564939) | |
| 659-838, gnl|bosTau2|chr18 (54838101-54837922) | |
| 659-838, gnl|Hg17|chr19 (60376868-60376689) | |
| 659-838, gnl|Mm7|chr7 (4113700-4113523) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| ecc (0.345105) | |
| fcc (0.197785) | |
| hyp (0.142837) | |
| ebs (0.118301) | |
| jej (0.0989218) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.345105) | |
| fcc (0.197785) | |
| hyp (0.142837) | |
| ebs (0.118301) | |
| jej (0.0989218) |