Non-Coding RNA Search

Ss1.1-recc2807c_j12.5

Sequence:


               
               CACACACACACACACACACACACACACACACACACACACTTTTGACTTTTTACTTATTGT
ATATGTCACACTATAATTATCTTTTTCTTAGGTTCACACACACTTTTCCCATCTTATAAA
ATCCTTACCCCATTCATCGTCCAAATATATTAAGTTATGTGCTATATGTTTGCTTTCTGT
AAATTCTTTTAAATTATTTTATATATACTTTGTGAAGTCTTGTACTGCACATTGTAAACA
GATGTCTTTGATCACTGATTAAGTTCATTGTTTAAGAGAATTTTGATAAAAATAGCTTTG
AACATTTGGCCCTTATTAAGAAATAAAATAACCCACTGCAAATTTGCTTATATTGGAAAA
TGTATGGCTTGACATTCTTTATTTTTAATCACAATCTATTTCAGATAAATAATAATTTGG
GGATCTGTACCTAAATACTAGTTGGGCCACCTTTGGGAAGGGAATGCAAAGAAATAACTG
TCCCTGGAAACTAAATGTGAATTTCTGACAGAACAGAAATATTGTTATAATGAGGCAATA
ATAAAATTAGGAAATTAAATTCTTTTAAAATCTGTCCGTGTGATTTTTCCCCTTGATAAA
ATACATGAAATGCACAGTTCAAGAAGTATCTTCTTCTGAATTCATAGTTTCTTATATCTT
AATCCCGAATAGATAAAACTTATTAATGTGTTACTCATAAGTCTAAGAAATTTACAGATG
ATATTGCTATCAGGAGGATAAATTATAGCTGTGCAATATTAATATTTCTCCCACCACTTA
AAAAAAGGTAAAGCAGTTTTAAAAAATATTACTTTACACCACAACTTTGCATGATGGAGA
TTTTGAACATCTAAATTGATGGCTTTTACTTACAAGTTATTTAATATTGTTAGCACTGTA
ATATCATATGATTTCCTTACATTTTTTGTTATGTGATAAACTGTAACTATGTAATTAAAC
AGAATTCTGACAACCATATTCTGCTAAACTTTAAAATGTCACTTATTCCTTTACTTATTG
GCTTGCTATTTTCAAAATAAAGTAAAAGAAGGCCCTTTATTAAACATAAGATTACTGAGA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACACACACACACACACACACACACACACACACACACACTTTTGACTTTTTACTTATTGT
ATATGTCACACTATAATTATCTTTTTCTTAGGTTCACACACACTTTTCCCATCTTATAAA
ATCCTTACCCCATTCATCGTCCAAATATATTAAGTTATGTGCTATATGTTTGCTTTCTGT
AAATTCTTTTAAATTATTTTATATATACTTTGTGAAGTCTTGTACTGCACATTGTAAACA
GATGTCTTTGATCACTGATTAAGTTCATTGTTTAAGAGAATTTTGATAAAAATAGCTTTG
AACATTTGGCCCTTATTAAGAAATAAAATAACCCACTGCAAATTTGCTTATATTGGAAAA
TGTATGGCTTGACATTCTTTATTTTTAATCACAATCTATTTCAGATAAATAATAATTTGG
GGATCTGTACCTAAATACTAGTTGGGCCACCTTTGGGAAGGGAATGCAAAGAAATAACTG
TCCCTGGAAACTAAATGTGAATTTCTGACAGAACAGAAATATTGTTATAATGAGGCAATA
ATAAAATTAGGAAATTAAATTCTTTTAAAATCTGTCCGTGTGATTTTTCCCCTTGATAAA
ATACATGAAATGCACAGTTCAAGAAGTATCTTCTTCTGAATTCATAGTTTCTTATATCTT
AATCCCGAATAGATAAAACTTATTAATGTGTTACTCATAAGTCTAAGAAATTTACAGATG
ATATTGCTATCAGGAGGATAAATTATAGCTGTGCAATATTAATATTTCTCCCACCACTTA
AAAAAAGGTAAAGCAGTTTTAAAAAATATTACTTTACACCACAACTTTGCATGATGGAGA
TTTTGAACATCTAAATTGATGGCTTTTACTTACAAGTTATTTAATATTGTTAGCACTGTA
ATATCATATGATTTCCTTACATTTTTTGTTATGTGATAAACTGTAACTATGTAATTAAAC
AGAATTCTGACAACCATATTCTGCTAAACTTTAAAATGTCACTTATTCCTTTACTTATTG
GCTTGCTATTTTCAAAATAAAGTAAAAGAAGGCCCTTTATTAAACATAAGATTACTGAGA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               27-1081, gnl|bosTau2|chr24 (7975567-7976594)
               

               
               27-1081, gnl|Hg17|chr18 (65666268-65667315)
               

               
               27-1081, gnl|Mm7|chr18 (89617700-89616666)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               27-1081, gnl|bosTau2|chr24 (7975567-7976594)
               

               
               27-1081, gnl|Hg17|chr18 (65666268-65667315)
               

               
               27-1081, gnl|Mm7|chr18 (89617700-89616666)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               fco (0.157208)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)
               

               
               ecc (0.115035)

	27-1081, gnl\|bosTau2\|chr24 (7975567-7976594)
	27-1081, gnl\|Hg17\|chr18 (65666268-65667315)
	27-1081, gnl\|Mm7\|chr18 (89617700-89616666)