Non-Coding RNA Search

Ss1.1-recc2807c_n18.5

Sequence:


               
               ATCGCAATGAAATAAAGACTTCCTAAACTAGTTACAGCGCATGTGGTTCCAATACTCTTG
AATTTTCTGCCTGTCTCCAAGGAACAGCAATCGCAGGAGCAGACAAGCACCCTGCCCGGG
TGCTGTGCAGAAAGAGCTCCCTTTAAATTAACAGGGAACATTATGATCTCAGAAACATCA
CTGACTTGGTCAGAAGAAACAGCCTATTCCACAATAGTAATAGGAATTTTTATTATATAA
TGTGATTTTTCTTAGATATCACTGTCCATTTTTGACTTGAGACACAAACTATCACATGTT
GAAAGTCATTGTATTTTTCTAAGATGGTATCACTAACATTTAATAGCTTCAAGTCATGTG
CTATGTCAATTTCCCAAATGTTTCAGAGCTAGAATGAAATTTATCTGCATATGAATAGCA
GAAAATGTTTCCGCTTATATCGTACACCCATATCTTTAGTACGTTGAAATCAGTGATTTC
AAAAGAGGTTCCTGTGGGACTCTTTGAACTACTTTAATAGATTTTCATCTCCAGAATTGT
CTATAACTGATGTGACATATATAATCTGTAAGGCATTATGTAACGATTATGCCATAATCA
TCAGTGTCAAAGACCTTTTATAAAAATTGACAATACTGTTCTGTAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCGCAATGAAATAAAGACTTCCTAAACTAGTTACAGCGCATGTGGTTCCAATACTCTTG
AATTTTCTGCCTGTCTCCAAGGAACAGCAATCGCAGGAGCAGACAAGCACCCTGCCCGGG
TGCTGTGCAGAAAGAGCTCCCTTTAAATTAACAGGGAACATTATGATCTCAGAAACATCA
CTGACTTGGTCAGAAGAAACAGCCTATTCCACAATAGTAATAGGAATTTTTATTATATAA
TGTGATTTTTCTTAGATATCACTGTCCATTTTTGACTTGAGACACAAACTATCACATGTT
GAAAGTCATTGTATTTTTCTAAGATGGTATCACTAACATTTAATAGCTTCAAGTCATGTG
CTATGTCAATTTCCCAAATGTTTCAGAGCTAGAATGAAATTTATCTGCATATGAATAGCA
GAAAATGTTTCCGCTTATATCGTACACCCATATCTTTAGTACGTTGAAATCAGTGATTTC
AAAAGAGGTTCCTGTGGGACTCTTTGAACTACTTTAATAGATTTTCATCTCCAGAATTGT
CTATAACTGATGTGACATATATAATCTGTAAGGCATTATGTAACGATTATGCCATAATCA
TCAGTGTCAAAGACCTTTTATAAAAATTGACAATACTGTTCTGTAATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               62-174, - strand, RNAz p=0.647906

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               62-174, - strand, RNAz p=0.647906

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               4-190, gnl|bosTau2|chr15 (30814830-30815021)
               

               
               4-190, gnl|canFam2|chr10 (49397738-49397888)
               

               
               4-190, gnl|dasNov1|scaffold_206778 (1057-910)
               

               
               4-190, gnl|echTel1|scaffold_312103 (68394-68515)
               

               
               4-190, gnl|hg17|chr2 (43949445-43949591)
               

               
               4-190, gnl|Hg17|chr2 (43949461-43949648)
               

               
               4-190, gnl|loxAfr1|scaffold_11712 (26321-26176)
               

               
               4-190, gnl|mm7|chr17 (82950852-82950966)
               

               
               4-190, gnl|oryCun1|scaffold_200062 (33699-33560)
               

               
               4-190, gnl|panTro1|chr12 (45609995-45610141)
               

               
               4-190, gnl|rheMac2|chr13 (43931232-43931378)
               

               
               4-190, gnl|rn3|chr6 (8026421-8026534)
               


               
               219-648, gnl|bosTau2|chr15 (30815025-30815455)
               

               
               219-648, gnl|Hg17|chr2 (43949652-43950108)
               

               
               219-648, gnl|Mm7|chr17 (82951019-82951436)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-190, gnl|bosTau2|chr15 (30814830-30815021)
               

               
               4-190, gnl|canFam2|chr10 (49397738-49397888)
               

               
               4-190, gnl|dasNov1|scaffold_206778 (1057-910)
               

               
               4-190, gnl|echTel1|scaffold_312103 (68394-68515)
               

               
               4-190, gnl|hg17|chr2 (43949445-43949591)
               

               
               4-190, gnl|Hg17|chr2 (43949461-43949648)
               

               
               4-190, gnl|loxAfr1|scaffold_11712 (26321-26176)
               

               
               4-190, gnl|mm7|chr17 (82950852-82950966)
               

               
               4-190, gnl|oryCun1|scaffold_200062 (33699-33560)
               

               
               4-190, gnl|panTro1|chr12 (45609995-45610141)
               

               
               4-190, gnl|rheMac2|chr13 (43931232-43931378)
               

               
               4-190, gnl|rn3|chr6 (8026421-8026534)
               


               
               219-648, gnl|bosTau2|chr15 (30815025-30815455)
               

               
               219-648, gnl|Hg17|chr2 (43949652-43950108)
               

               
               219-648, gnl|Mm7|chr17 (82951019-82951436)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)
               

               
               ecc (0.115035)

	4-190, gnl\|bosTau2\|chr15 (30814830-30815021)
	4-190, gnl\|canFam2\|chr10 (49397738-49397888)
	4-190, gnl\|dasNov1\|scaffold_206778 (1057-910)
	4-190, gnl\|echTel1\|scaffold_312103 (68394-68515)
	4-190, gnl\|hg17\|chr2 (43949445-43949591)
	4-190, gnl\|Hg17\|chr2 (43949461-43949648)
	4-190, gnl\|loxAfr1\|scaffold_11712 (26321-26176)
	4-190, gnl\|mm7\|chr17 (82950852-82950966)
	4-190, gnl\|oryCun1\|scaffold_200062 (33699-33560)
	4-190, gnl\|panTro1\|chr12 (45609995-45610141)
	4-190, gnl\|rheMac2\|chr13 (43931232-43931378)
	4-190, gnl\|rn3\|chr6 (8026421-8026534)

	219-648, gnl\|bosTau2\|chr15 (30815025-30815455)
	219-648, gnl\|Hg17\|chr2 (43949652-43950108)
	219-648, gnl\|Mm7\|chr17 (82951019-82951436)