Non-Coding RNA Search

Ss1.1-recc2807c_o14.5

Sequence:


               
               TGCTCAGCCCCTCTCACCGCGCCTGCGCCCTGGAGCTGGGGTTTGACTTTGGCACAGCCC
AGATGCGGCACCGCGCCAGATATGTGCCTTCTCAACAAACGTTCCTGTTCGTTTTGGTGG
TTTGTTTTTTCAGTTCACCAGAGGCTCAGGAGAGAACTTGCTTTCCCAGGAAAGCAAGCT
CAGTCTCCAGGAAGCTGGGTGGGGAGAAGGGCGCTTGGCTTCATTCAGGGCGCTGGGGCC
TTGGCACCCGACAGAAGCGCAGTGGCTACCTGCCTGTCTCACCTGTCATTTTTTCTGCCC
GGGGCAGGTCACGGGATGGACAGCCGGCCGGCCATGGCTATCTTCGAGCTGCTGGACTAC
ATCGTGAATGAGCCACCTCCCAAGCTGCCCAATGGCGTCTTCACCCAGGACTTCCAGGAG
TTTGTAAATAAATGCCTAATTAAGAACCCAGCAGAGCGAGCGGATCTGAAGATGCTCATG
AACCACACCTTCATCAAACGGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTCAGCCCCTCTCACCGCGCCTGCGCCCTGGAGCTGGGGTTTGACTTTGGCACAGCCC
AGATGCGGCACCGCGCCAGATATGTGCCTTCTCAACAAACGTTCCTGTTCGTTTTGGTGG
TTTGTTTTTTCAGTTCACCAGAGGCTCAGGAGAGAACTTGCTTTCCCAGGAAAGCAAGCT
CAGTCTCCAGGAAGCTGGGTGGGGAGAAGGGCGCTTGGCTTCATTCAGGGCGCTGGGGCC
TTGGCACCCGACAGAAGCGCAGTGGCTACCTGCCTGTCTCACCTGTCATTTTTTCTGCCC
GGGGCAGGTCACGGGATGGACAGCCGGCCGGCCATGGCTATCTTCGAGCTGCTGGACTAC
ATCGTGAATGAGCCACCTCCCAAGCTGCCCAATGGCGTCTTCACCCAGGACTTCCAGGAG
TTTGTAAATAAATGCCTAATTAAGAACCCAGCAGAGCGAGCGGATCTGAAGATGCTCATG
AACCACACCTTCATCAAACGGTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8CB46_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8CB46_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               243-362, - strand, RNAz p=0.536069

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               243-362, - strand, RNAz p=0.536069

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               21-405, gnl|bosTau2|chr7 (15835159-15834750)
               

               
               21-405, gnl|Hg17|chr19 (4048657-4048259)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-405, gnl|bosTau2|chr7 (15835159-15834750)
               

               
               21-405, gnl|Hg17|chr19 (4048657-4048259)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)
               

               
               ecc (0.115035)

	21-405, gnl\|bosTau2\|chr7 (15835159-15834750)
	21-405, gnl\|Hg17\|chr19 (4048657-4048259)