Non-Coding RNA Search

Ss1.1-recc2807c_o6.5

Sequence:


               
               CCCTCCCGCTCCCTCCGCAGTGATTAGCTGTTCTCCACTTGCCTGTTAGTTGTGACCCCT
GGGTGTTGGCATCTGTGCCATCTGGCCCATTTCCCCCAGCCACCTGTGAGTCGTTTAGAT
AGATCCAGCCCTCCCTGGGGCTCCCCGCCACCCCCAGCTTTGTGTGTGGTAGTGTAGTGA
TTTTCTAGAGAGAAGCTGGGCTCTGGCCATCACCCACACCCCCTGGGCGCCAGCCTTGCC
CTCTGGGCCTCAGGCCAGCCCTTCCTCTGCCCCCTGCTGGCGAGCCAGTTCGGGCATTCA
GAGAGGAGCCGGAGCGCCTTCACCACCCACACCCAGACTCTGAGCCCCCTGCTCCTACTG
GTTGGGGGTGGGGGTGCTCTTTAACACTCCCCCCTCTTGGGTTAGCAGGGGTGGGTCCAG
GAAGGTGGTATTTCTGTCCTCTGCCCACCCCCACTCCCACCCCGTCTTCAGTGTGCATGT
TAATCAGGAATTCAGCTGGACCCACTGTACCAGCATGCATGGCTCCTCCCTAGAAGCCCC
AAGGGTCCCCACATACCCCACACCTTCACCTTCCTGCCTCACCCTAAACTCACACCCTCT
CCCCCTCCCTCCCAGAACCCCCATTTAGCACTGGGCACAGCATACGCAGCTGGGAGTGGC
CCGGAACAGAGGTCCTGGCTGGCCTGTTTGGTTGGCTGTGTCTCGGGCCAGGCCTGAGCC
CGACCGCAAGCATACTCTAGGCAGAGGGTTCAAGTTGATGCTCTTTCCTGGTGCAGACCT
GGAGACCTTTCCCCACCCCTAATCATGAGTCTTGAGTGCAGCACTCTAGTCATCCGGTGG
GGGAGTCTGCCCTCCAGCGCTCTCACTCCCCCACCCACCCCCGACCCCAAGTCAGGTGAG
TGGGTCCTGGGCCAGGAAGGTCCGTATCATTTACTGTTTGCTGAGTGGAAGCAGCTAGCA
GGGCTGCCAGTGTGTGTGGCTGTGAAAGCTGCGTGGCCCTGCCCTGCGGGCTGGTGGGGA
GCACCCCCAGGAGGCCACCTCCCTGTCACCCCCACACCAGGATGTGGATCTTGGGGCCTT
TCGATCATGTGTTGGTGCAGCACTGGCTGCTTCAGCTAAATTGAGCCCCACTCCTTCAAT
AGTTGAGAGAAGCCCCTAAATTGGTCGGCCCTGACCATCCCACCCCGCCCCCTGCTTGTC
TGAGGGAGCGGCTCAGAGCTGCTCACTGGACTCTCCCAGGCTGGGCCGCCCACCCCGGCC
TCACCGCGCGCCAGCCAGTGTGACCTGACCCAGCCCTTGTGCAGAGCCCCCTCCTGTCTG
GCCCCTGTGGTTTACATGATCTTTGCTCTGTTTACAGCAGGGTTTGAAGCAGGGTTCTTT
GTCCGGAATCCTGCCCAAGGCCCTTCTGTTCAGACATTCCTGTGCTGAATAAAGTGTGTT
TGACTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTCCCGCTCCCTCCGCAGTGATTAGCTGTTCTCCACTTGCCTGTTAGTTGTGACCCCT
GGGTGTTGGCATCTGTGCCATCTGGCCCATTTCCCCCAGCCACCTGTGAGTCGTTTAGAT
AGATCCAGCCCTCCCTGGGGCTCCCCGCCACCCCCAGCTTTGTGTGTGGTAGTGTAGTGA
TTTTCTAGAGAGAAGCTGGGCTCTGGCCATCACCCACACCCCCTGGGCGCCAGCCTTGCC
CTCTGGGCCTCAGGCCAGCCCTTCCTCTGCCCCCTGCTGGCGAGCCAGTTCGGGCATTCA
GAGAGGAGCCGGAGCGCCTTCACCACCCACACCCAGACTCTGAGCCCCCTGCTCCTACTG
GTTGGGGGTGGGGGTGCTCTTTAACACTCCCCCCTCTTGGGTTAGCAGGGGTGGGTCCAG
GAAGGTGGTATTTCTGTCCTCTGCCCACCCCCACTCCCACCCCGTCTTCAGTGTGCATGT
TAATCAGGAATTCAGCTGGACCCACTGTACCAGCATGCATGGCTCCTCCCTAGAAGCCCC
AAGGGTCCCCACATACCCCACACCTTCACCTTCCTGCCTCACCCTAAACTCACACCCTCT
CCCCCTCCCTCCCAGAACCCCCATTTAGCACTGGGCACAGCATACGCAGCTGGGAGTGGC
CCGGAACAGAGGTCCTGGCTGGCCTGTTTGGTTGGCTGTGTCTCGGGCCAGGCCTGAGCC
CGACCGCAAGCATACTCTAGGCAGAGGGTTCAAGTTGATGCTCTTTCCTGGTGCAGACCT
GGAGACCTTTCCCCACCCCTAATCATGAGTCTTGAGTGCAGCACTCTAGTCATCCGGTGG
GGGAGTCTGCCCTCCAGCGCTCTCACTCCCCCACCCACCCCCGACCCCAAGTCAGGTGAG
TGGGTCCTGGGCCAGGAAGGTCCGTATCATTTACTGTTTGCTGAGTGGAAGCAGCTAGCA
GGGCTGCCAGTGTGTGTGGCTGTGAAAGCTGCGTGGCCCTGCCCTGCGGGCTGGTGGGGA
GCACCCCCAGGAGGCCACCTCCCTGTCACCCCCACACCAGGATGTGGATCTTGGGGCCTT
TCGATCATGTGTTGGTGCAGCACTGGCTGCTTCAGCTAAATTGAGCCCCACTCCTTCAAT
AGTTGAGAGAAGCCCCTAAATTGGTCGGCCCTGACCATCCCACCCCGCCCCCTGCTTGTC
TGAGGGAGCGGCTCAGAGCTGCTCACTGGACTCTCCCAGGCTGGGCCGCCCACCCCGGCC
TCACCGCGCGCCAGCCAGTGTGACCTGACCCAGCCCTTGTGCAGAGCCCCCTCCTGTCTG
GCCCCTGTGGTTTACATGATCTTTGCTCTGTTTACAGCAGGGTTTGAAGCAGGGTTCTTT
GTCCGGAATCCTGCCCAAGGCCCTTCTGTTCAGACATTCCTGTGCTGAATAAAGTGTGTT
TGACTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               374-475, - strand, RNAz p=0.986256
               

               
               922-1037, - strand, RNAz p=0.829299
               

               
               1312-1446, - strand, RNAz p=0.942425

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               374-475, - strand, RNAz p=0.986256
               

               
               922-1037, - strand, RNAz p=0.829299
               

               
               1312-1446, - strand, RNAz p=0.942425

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1446, gnl|bosTau2|chr19 (38849907-38848451)
               

               
               1-1446, gnl|Hg17|chr17 (37926695-37928116)
               

               
               1-1446, gnl|Mm7|chr11 (101171474-101172750)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1446, gnl|bosTau2|chr19 (38849907-38848451)
               

               
               1-1446, gnl|Hg17|chr17 (37926695-37928116)
               

               
               1-1446, gnl|Mm7|chr11 (101171474-101172750)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               fcc (0.593354)
               

               
               ebs (0.473205)
               

               
               hyp (0.42851)
               

               
               ecc (0.23007)
               

               
               mas (0.210305)
               

               
               nbm (0.198649)
               

               
               eye (0.170503)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.593354)
               

               
               ebs (0.473205)
               

               
               hyp (0.42851)
               

               
               ecc (0.23007)
               

               
               mas (0.210305)
               

               
               nbm (0.198649)
               

               
               eye (0.170503)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)

	374-475, - strand, RNAz p=0.986256
	922-1037, - strand, RNAz p=0.829299
	1312-1446, - strand, RNAz p=0.942425

	1-1446, gnl\|bosTau2\|chr19 (38849907-38848451)
	1-1446, gnl\|Hg17\|chr17 (37926695-37928116)
	1-1446, gnl\|Mm7\|chr11 (101171474-101172750)

	fcc (0.593354)
	ebs (0.473205)
	hyp (0.42851)
	ecc (0.23007)
	mas (0.210305)
	nbm (0.198649)
	eye (0.170503)
	hlv (0.139256)
	nmm (0.132802)