Non-Coding RNA Search

Ss1.1-recc2807c_p6.5

Sequence:


               
               AGCTGTGAAACCCCCAGTAGGGGCAACGCTGTGTAGCATTAACCCCCTTGGGGGGGGTTC
GCTGCTGGTCTAAATTGGACCCTCCCCACTCATGCCCCTGCCTGAGGGGGCCCCCCCAGG
TCAGAGAGACAGACCCCCCCCCCAGGGGGGACCATTTCATTGGGGGTGGAGTTTTTTCAT
TCACTTTTTATTTTTTACTGATAATGGAGATGTTTGGGCCCTGCCCCCCCACCTGTCAGT
CTCGTCCTGGCCCCGCCCCTCTGTGCTGCGCGTCCCCTCATACTCTGCCTGCCCCTCCCT
CCTAGGTGAACCCCAGGTCCTTATCCTGCCCCCGGTTATGTGTTTAAAGTTAATGGTTTC
AGATGTGAACATCTTGTGTTAACTGTAGCTCTGTAAATTTTTTGTGGGGGGGGTGGGCAG
GGAGGGGTCAGAAAGTAGGGGTCAAGGATTTTTGTTTTTGTTTTCATTTTTGCAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTGTGAAACCCCCAGTAGGGGCAACGCTGTGTAGCATTAACCCCCTTGGGGGGGGTTC
GCTGCTGGTCTAAATTGGACCCTCCCCACTCATGCCCCTGCCTGAGGGGGCCCCCCCAGG
TCAGAGAGACAGACCCCCCCCCCAGGGGGGACCATTTCATTGGGGGTGGAGTTTTTTCAT
TCACTTTTTATTTTTTACTGATAATGGAGATGTTTGGGCCCTGCCCCCCCACCTGTCAGT
CTCGTCCTGGCCCCGCCCCTCTGTGCTGCGCGTCCCCTCATACTCTGCCTGCCCCTCCCT
CCTAGGTGAACCCCAGGTCCTTATCCTGCCCCCGGTTATGTGTTTAAAGTTAATGGTTTC
AGATGTGAACATCTTGTGTTAACTGTAGCTCTGTAAATTTTTTGTGGGGGGGGTGGGCAG
GGAGGGGTCAGAAAGTAGGGGTCAAGGATTTTTGTTTTTGTTTTCATTTTTGCAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               63-207, - strand, RNAz p=0.999833

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               63-207, - strand, RNAz p=0.999833

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               74-157, - strand, RNAmicro p=0.970703

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               74-157, - strand, RNAmicro p=0.970703

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               63-480, gnl|bosTau2|chr7 (29192283-29191866)
               

               
               63-480, gnl|Hg17|chr19 (1209386-1209797)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               63-480, gnl|bosTau2|chr7 (29192283-29191866)
               

               
               63-480, gnl|Hg17|chr19 (1209386-1209797)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               mcp (0.170648)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               mcp (0.170648)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)

	63-480, gnl\|bosTau2\|chr7 (29192283-29191866)
	63-480, gnl\|Hg17\|chr19 (1209386-1209797)

	ebs (0.236602)
	ece (0.229305)
	jca (0.22792)
	mcp (0.170648)
	ese (0.126502)
	ecc (0.115035)