Ss1.1-recc2808c_b20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGGGCCAGGTGATGATGGCGGCGCTAGTTGCGGCCGAGGCCACAGAGCCCCGCGGCCGA AACGGCCCGGGCAGAGGTCGAGCCCCTCGGAGCCGCCTGGCCAATCAGATCCCTTCCGAG ATCCTGAACAACCCCCAGCTGCAGGCAGCCATCCAAGTCCTGCCTTCCAACTATAACTTT GAGATTCCCAAGACCATCTGGAGGATCCAGCAGGCCCAGGCCAAGAAAGTGGCCTTACAA ATGCCTGAAGGCCTCCTCCTCTTCGCCTGTACCATTGTGGATATCTTGGAAAGGTTCACA GAAGCCGAAGTGATGGTGATGGGTGATGTGACCTATGGGGCTTGCTGTGTGGATGACTTT ACCGCAAGGGCCCTGGGAGCTGACTTCCTGGTGCACTATGGCCACAGCTGCCTGGTTCCC ATGGACACCTCCACCCAAGACTTCCGGGTGCTGTACGTCTTTGTGGACATCCGGATAGAC ACCACGCACCTACTGGACTCTATCCGCCTCACCTTTCCCCCAGCCAGTGCCCTTGCGCTG GTCAGCACCATTCAGTTTGTGTCCACCTTGCAGGCGGTTGCCCAAGAGCTGAAAGCTGAG TATCGTGTGAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGGGCCAGGTGATGATGGCGGCGCTAGTTGCGGCCGAGGCCACAGAGCCCCGCGGCCGA AACGGCCCGGGCAGAGGTCGAGCCCCTCGGAGCCGCCTGGCCAATCAGATCCCTTCCGAG ATCCTGAACAACCCCCAGCTGCAGGCAGCCATCCAAGTCCTGCCTTCCAACTATAACTTT GAGATTCCCAAGACCATCTGGAGGATCCAGCAGGCCCAGGCCAAGAAAGTGGCCTTACAA ATGCCTGAAGGCCTCCTCCTCTTCGCCTGTACCATTGTGGATATCTTGGAAAGGTTCACA GAAGCCGAAGTGATGGTGATGGGTGATGTGACCTATGGGGCTTGCTGTGTGGATGACTTT ACCGCAAGGGCCCTGGGAGCTGACTTCCTGGTGCACTATGGCCACAGCTGCCTGGTTCCC ATGGACACCTCCACCCAAGACTTCCGGGTGCTGTACGTCTTTGTGGACATCCGGATAGAC ACCACGCACCTACTGGACTCTATCCGCCTCACCTTTCCCCCAGCCAGTGCCCTTGCGCTG GTCAGCACCATTCAGTTTGTGTCCACCTTGCAGGCGGTTGCCCAAGAGCTGAAAGCTGAG TATCGTGTGAGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 110-227, - strand, RNAz p=0.735246 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 110-227, - strand, RNAz p=0.735246 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 75-227, gnl|bosTau2|chr19 (17594412-17594564) | |
| 75-227, gnl|canFam2|chr9 (49465197-49465404) | |
| 75-227, gnl|dasNov1|scaffold_40962 (733-939) | |
| 75-227, gnl|fr1|chrUn (60264078-60263897) | |
| 75-227, gnl|galGal2|chrUn (144566001-144565832) | |
| 75-227, gnl|hg17|chr17 (1883513-1883719) | |
| 75-227, gnl|Hg17|chr17 (1883547-1883699) | |
| 75-227, gnl|mm7|chr11 (75267728-75267521) | |
| 75-227, gnl|Mm7|chr11 (75267691-75267539) | |
| 75-227, gnl|monDom2|scaffold_86 (3245076-3245334) | |
| 75-227, gnl|oryCun1|scaffold_212501 (54630-54835) | |
| 75-227, gnl|panTro1|chr19 (2056632-2056838) | |
| 75-227, gnl|rheMac2|chr16 (1828233-1828439) | |
| 75-227, gnl|tetNig1|chr16 (3393791-3393619) | |
| 75-227, gnl|xenTro1|scaffold_50 (2353381-2353212) | |
| 415-574, gnl|bosTau2|chr19 (17596880-17597039) | |
| 415-574, gnl|canFam2|chr9 (49467682-49467888) | |
| 415-574, gnl|dasNov1|scaffold_40650 (48456-48667) | |
| 415-574, gnl|echTel1|scaffold_312206 (47835-48044) | |
| 415-574, gnl|fr1|chrUn (60245157-60244990) | |
| 415-574, gnl|galGal2|chr19 (5180760-5180960) | |
| 415-574, gnl|hg17|chr17 (1886536-1886742) | |
| 415-574, gnl|Hg17|chr17 (1886572-1886731) | |
| 415-574, gnl|loxAfr1|scaffold_176624 (485-276) | |
| 415-574, gnl|mm7|chr11 (75265238-75265033) | |
| 415-574, gnl|Mm7|chr11 (75265201-75265042) | |
| 415-574, gnl|monDom2|scaffold_86 (3247434-3247643) | |
| 415-574, gnl|oryCun1|scaffold_212501 (60216-60416) | |
| 415-574, gnl|panTro1|chr19 (2061344-2061550) | |
| 415-574, gnl|rheMac2|chr16 (1831393-1831598) | |
| 415-574, gnl|rn3|chr10 (62505085-62504884) | |
| 415-574, gnl|tetNig1|chr16 (3376140-3375958) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 75-227, gnl|bosTau2|chr19 (17594412-17594564) | |
| 75-227, gnl|canFam2|chr9 (49465197-49465404) | |
| 75-227, gnl|dasNov1|scaffold_40962 (733-939) | |
| 75-227, gnl|fr1|chrUn (60264078-60263897) | |
| 75-227, gnl|galGal2|chrUn (144566001-144565832) | |
| 75-227, gnl|hg17|chr17 (1883513-1883719) | |
| 75-227, gnl|Hg17|chr17 (1883547-1883699) | |
| 75-227, gnl|mm7|chr11 (75267728-75267521) | |
| 75-227, gnl|Mm7|chr11 (75267691-75267539) | |
| 75-227, gnl|monDom2|scaffold_86 (3245076-3245334) | |
| 75-227, gnl|oryCun1|scaffold_212501 (54630-54835) | |
| 75-227, gnl|panTro1|chr19 (2056632-2056838) | |
| 75-227, gnl|rheMac2|chr16 (1828233-1828439) | |
| 75-227, gnl|tetNig1|chr16 (3393791-3393619) | |
| 75-227, gnl|xenTro1|scaffold_50 (2353381-2353212) | |
| 415-574, gnl|bosTau2|chr19 (17596880-17597039) | |
| 415-574, gnl|canFam2|chr9 (49467682-49467888) | |
| 415-574, gnl|dasNov1|scaffold_40650 (48456-48667) | |
| 415-574, gnl|echTel1|scaffold_312206 (47835-48044) | |
| 415-574, gnl|fr1|chrUn (60245157-60244990) | |
| 415-574, gnl|galGal2|chr19 (5180760-5180960) | |
| 415-574, gnl|hg17|chr17 (1886536-1886742) | |
| 415-574, gnl|Hg17|chr17 (1886572-1886731) | |
| 415-574, gnl|loxAfr1|scaffold_176624 (485-276) | |
| 415-574, gnl|mm7|chr11 (75265238-75265033) | |
| 415-574, gnl|Mm7|chr11 (75265201-75265042) | |
| 415-574, gnl|monDom2|scaffold_86 (3247434-3247643) | |
| 415-574, gnl|oryCun1|scaffold_212501 (60216-60416) | |
| 415-574, gnl|panTro1|chr19 (2061344-2061550) | |
| 415-574, gnl|rheMac2|chr16 (1831393-1831598) | |
| 415-574, gnl|rn3|chr10 (62505085-62504884) | |
| 415-574, gnl|tetNig1|chr16 (3376140-3375958) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.115035) | |
| cty (0.10408) |