Non-Coding RNA Search

Ss1.1-recc2808c_o19.5

Sequence:


               
               TAATGGGCACATCAGCTCTCATTCCCTTGCACATGACAGGTATTATATGACATGGATTAT
TACAATACTCTTTCCTAATGACTCAGAATACCTTATACTCCTTAGCATAGTGATCTAAGT
GGCCACTGCTAATAAGCTAAAATTTGCATGGGAGATGAAACCCATTTGTCATCTTGGTTC
TCATATGCTTTTGAATTACTACAGTGGCAGCCTTGGAAAATACCTTTTTTGGGAAGTAGA
AAAATAAGGTATTACTGCATTAATGTTTATTGTGAATGCTAAATGAAAAATTATATAATT
TTTTTTGAAAAGTTTAAGTAGTTTTTATTTTGTCTTAGGGTCATTATCTATGAATCCTGG
AAACTTGTACTGCTTCATTTTATGATGAATATCAGGGGAATTATAGGAATTAATATGTTT
GTTACACCATATATACTTAAGCATGCAGGTATCTGGGACTTAACAGCTATTCAGGAAAAA
TGGTGAACCTCAGCACCTCAGTTTGAACATCGTTGAAAAGAGCACTGTGAAGAACTTAAC
ATTAAAGATTTAATCCCCTTACAATCAGATGTAAGGAGAGAAGACAGTTTCTGAAAGAAG
CAATTTTAAATGACAGAAAAGAACTGAAAGAGCCACAAAAAGGAAATGAAGAAACATCAC
CTCAGCTTTGAGGCTTCCAAACATAGGGATAAATAGTTTTTAGGTTGTTATCGTGTCATC
CTGAGTTACTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAATGGGCACATCAGCTCTCATTCCCTTGCACATGACAGGTATTATATGACATGGATTAT
TACAATACTCTTTCCTAATGACTCAGAATACCTTATACTCCTTAGCATAGTGATCTAAGT
GGCCACTGCTAATAAGCTAAAATTTGCATGGGAGATGAAACCCATTTGTCATCTTGGTTC
TCATATGCTTTTGAATTACTACAGTGGCAGCCTTGGAAAATACCTTTTTTGGGAAGTAGA
AAAATAAGGTATTACTGCATTAATGTTTATTGTGAATGCTAAATGAAAAATTATATAATT
TTTTTTGAAAAGTTTAAGTAGTTTTTATTTTGTCTTAGGGTCATTATCTATGAATCCTGG
AAACTTGTACTGCTTCATTTTATGATGAATATCAGGGGAATTATAGGAATTAATATGTTT
GTTACACCATATATACTTAAGCATGCAGGTATCTGGGACTTAACAGCTATTCAGGAAAAA
TGGTGAACCTCAGCACCTCAGTTTGAACATCGTTGAAAAGAGCACTGTGAAGAACTTAAC
ATTAAAGATTTAATCCCCTTACAATCAGATGTAAGGAGAGAAGACAGTTTCTGAAAGAAG
CAATTTTAAATGACAGAAAAGAACTGAAAGAGCCACAAAAAGGAAATGAAGAAACATCAC
CTCAGCTTTGAGGCTTCCAAACATAGGGATAAATAGTTTTTAGGTTGTTATCGTGTCATC
CTGAGTTACTGT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               232-732, gnl|bosTau2|chr9 (14774529-14774039)
               

               
               232-732, gnl|Hg17|chr6 (122793297-122793827)
               

               
               232-732, gnl|Mm7|chr10 (57328447-57328906)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               232-732, gnl|bosTau2|chr9 (14774529-14774039)
               

               
               232-732, gnl|Hg17|chr6 (122793297-122793827)
               

               
               232-732, gnl|Mm7|chr10 (57328447-57328906)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fhi (0.169578)
               

               
               liv (0.146284)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               liv (0.146284)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)

	232-732, gnl\|bosTau2\|chr9 (14774529-14774039)
	232-732, gnl\|Hg17\|chr6 (122793297-122793827)
	232-732, gnl\|Mm7\|chr10 (57328447-57328906)