Non-Coding RNA Search

Ss1.1-recc2809c_a21.5

Sequence:


               
               ATAAATTAGAAGAAGAACTTGAGTGGCTGAAGAAATCTGAAGTCTTGTACTACAGTGTAG
AGAAAAAGGGGAATGTAAGTTCCCAGCTTAAACACTACAACCCTTGGAGCATGAAGTGTC
ACCAGCAACAGTTACAGAGAATGAAGGAGAATGCAAAACATCGAAACCAGTACAAATTTA
TTTTACTGGAGAACTTGACTTCCCGTTATGAGGTGCCTTGTGTCTTGGACCTCAAGATGG
GTACACGCCAGCATGGTGACGATGCTTCAGAGGAGAAGGCAGCTAACCAGATCCGCAAAT
GCCAGCAGAGCACATCTGCGGTCATTGGTGTCCGAGTATGTGGCATGCAGGTGTACCAGG
CAGGCAGTGGGCAGCTCATGTTCATGAACAAGTACCACGGACGGAAGCTGTCTGTGCAGG
GCTTCAAGGAGGCACTTTTCCAGTTCTTCCACAATGGAAGGTACCTGCGTCGGGAGCTTC
TGGGCCCTGTGCTTAGGAAGCTGACAGAGCTCAAGGCTGTCTTGGAGCGACAAGAATCCT
ACCGCTTCTACTCAAGCTCCCTGCTGGTCATCTATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAAATTAGAAGAAGAACTTGAGTGGCTGAAGAAATCTGAAGTCTTGTACTACAGTGTAG
AGAAAAAGGGGAATGTAAGTTCCCAGCTTAAACACTACAACCCTTGGAGCATGAAGTGTC
ACCAGCAACAGTTACAGAGAATGAAGGAGAATGCAAAACATCGAAACCAGTACAAATTTA
TTTTACTGGAGAACTTGACTTCCCGTTATGAGGTGCCTTGTGTCTTGGACCTCAAGATGG
GTACACGCCAGCATGGTGACGATGCTTCAGAGGAGAAGGCAGCTAACCAGATCCGCAAAT
GCCAGCAGAGCACATCTGCGGTCATTGGTGTCCGAGTATGTGGCATGCAGGTGTACCAGG
CAGGCAGTGGGCAGCTCATGTTCATGAACAAGTACCACGGACGGAAGCTGTCTGTGCAGG
GCTTCAAGGAGGCACTTTTCCAGTTCTTCCACAATGGAAGGTACCTGCGTCGGGAGCTTC
TGGGCCCTGTGCTTAGGAAGCTGACAGAGCTCAAGGCTGTCTTGGAGCGACAAGAATCCT
ACCGCTTCTACTCAAGCTCCCTGCTGGTCATCTATG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|5911911|emb|CAB55936.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|5911911|emb|CAB55936.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               387-506, + strand, RNAz p=0.527653

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               387-506, + strand, RNAz p=0.527653

Aligned organism(s): 20 entry(ies)

More info

Aligned organism(s): 20 entry(ies)

Help | Less info


               
               1-174, gnl|bosTau2|chr22 (39204890-39204717)
               

               
               1-174, gnl|danRer3|chr22 (37134478-37134334)
               

               
               1-174, gnl|dasNov1|scaffold_18929 (44404-44257)
               

               
               1-174, gnl|echTel1|scaffold_159743 (3050-3197)
               

               
               1-174, gnl|fr1|chrUn (228438922-228438786)
               

               
               1-174, gnl|galGal2|chr12 (9030909-9030765)
               

               
               1-174, gnl|hg17|chr3 (48703732-48703879)
               

               
               1-174, gnl|Hg17|chr3 (48703917-48703744)
               

               
               1-174, gnl|loxAfr1|scaffold_16975 (10567-10699)
               

               
               1-174, gnl|mm7|chr9 (108509612-108509465)
               

               
               1-174, gnl|Mm7|chr9 (108509425-108509598)
               

               
               1-174, gnl|monDom2|scaffold_5 (76908301-76908157)
               

               
               1-174, gnl|oryCun1|scaffold_202930 (47242-47096)
               

               
               1-174, gnl|panTro1|chr2 (50191740-50191887)
               

               
               1-174, gnl|rn3|chr8 (113874019-113873872)
               

               
               1-174, gnl|tetNig1|chr11 (6341484-6341347)
               

               
               1-174, gnl|xenTro1|scaffold_72 (2039762-2039902)
               


               
               348-576, gnl|bosTau2|chr22 (39201391-39201163)
               

               
               348-576, gnl|Hg17|chr3 (48701213-48700985)
               

               
               348-576, gnl|Mm7|chr9 (108515718-108515945)

Aligned organism(s): 20 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-174, gnl|bosTau2|chr22 (39204890-39204717)
               

               
               1-174, gnl|danRer3|chr22 (37134478-37134334)
               

               
               1-174, gnl|dasNov1|scaffold_18929 (44404-44257)
               

               
               1-174, gnl|echTel1|scaffold_159743 (3050-3197)
               

               
               1-174, gnl|fr1|chrUn (228438922-228438786)
               

               
               1-174, gnl|galGal2|chr12 (9030909-9030765)
               

               
               1-174, gnl|hg17|chr3 (48703732-48703879)
               

               
               1-174, gnl|Hg17|chr3 (48703917-48703744)
               

               
               1-174, gnl|loxAfr1|scaffold_16975 (10567-10699)
               

               
               1-174, gnl|mm7|chr9 (108509612-108509465)
               

               
               1-174, gnl|Mm7|chr9 (108509425-108509598)
               

               
               1-174, gnl|monDom2|scaffold_5 (76908301-76908157)
               

               
               1-174, gnl|oryCun1|scaffold_202930 (47242-47096)
               

               
               1-174, gnl|panTro1|chr2 (50191740-50191887)
               

               
               1-174, gnl|rn3|chr8 (113874019-113873872)
               

               
               1-174, gnl|tetNig1|chr11 (6341484-6341347)
               

               
               1-174, gnl|xenTro1|scaffold_72 (2039762-2039902)
               


               
               348-576, gnl|bosTau2|chr22 (39201391-39201163)
               

               
               348-576, gnl|Hg17|chr3 (48701213-48700985)
               

               
               348-576, gnl|Mm7|chr9 (108515718-108515945)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               fbs (0.175346)
               

               
               pty (0.142714)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               pty (0.142714)
               

               
               ecc (0.115035)

	1-174, gnl\|bosTau2\|chr22 (39204890-39204717)
	1-174, gnl\|danRer3\|chr22 (37134478-37134334)
	1-174, gnl\|dasNov1\|scaffold_18929 (44404-44257)
	1-174, gnl\|echTel1\|scaffold_159743 (3050-3197)
	1-174, gnl\|fr1\|chrUn (228438922-228438786)
	1-174, gnl\|galGal2\|chr12 (9030909-9030765)
	1-174, gnl\|hg17\|chr3 (48703732-48703879)
	1-174, gnl\|Hg17\|chr3 (48703917-48703744)
	1-174, gnl\|loxAfr1\|scaffold_16975 (10567-10699)
	1-174, gnl\|mm7\|chr9 (108509612-108509465)
	1-174, gnl\|Mm7\|chr9 (108509425-108509598)
	1-174, gnl\|monDom2\|scaffold_5 (76908301-76908157)
	1-174, gnl\|oryCun1\|scaffold_202930 (47242-47096)
	1-174, gnl\|panTro1\|chr2 (50191740-50191887)
	1-174, gnl\|rn3\|chr8 (113874019-113873872)
	1-174, gnl\|tetNig1\|chr11 (6341484-6341347)
	1-174, gnl\|xenTro1\|scaffold_72 (2039762-2039902)

	348-576, gnl\|bosTau2\|chr22 (39201391-39201163)
	348-576, gnl\|Hg17\|chr3 (48701213-48700985)
	348-576, gnl\|Mm7\|chr9 (108515718-108515945)