Ss1.1-recc2809c_f4.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCTGAGCTGAGCGAGGCGTGTCCAGTGGAGATGGTGAAGATGACAAAGTCCAAAACTTT CCAAGCCTACCTGCCAAATTGCCATCGAACGTACAGCTGTGTCCACTGCAGAGCCCATCT GGCCAATCACGACGAGCTGATCTCCAAGTCCTTTCAGGGGAGTCAGGGCCGAGCCTACCT CTTCAATTCTGTGGTGAATGTGGGTTGCGGCCCTGCGGAGGAGCGGGTCCTTCTCACCGG CCTGCACGCCGTGGCGGACATCTACTGCGAGAACTGCAAGACCACACTTGGGTGGAAATA TGAACATGCCTTTGAAAGCAGTCAGAAATATAAGGAAGGAAAATTTATCATTGAGCTTGC TCACATGATCAAAGACAATGGTTGGGAGTAAAGTGGAAACTTCCTGTTCCCTTTTGAATC CTATTTTCTGAAAGACGGTAAATGCAATGGGAACCTCTGGGTGACAGTATTTCTTGACCT TGAGCCTCGAAGGCTGGCCTCTATGGCCCATCCTGTGGGTAAGGTGTCCCTCCCGTCTGT GTCCTCTTCACGTACACAGTTGTTTCTGAGATGTTTCAATGACTTTTTTTTAACTTCTCA AGATCAAGCGAAAGACTTAACTGACTGATGACTTGCCCATCTAGTTAATACCTTCTTTTA ACCAATGCCTTTATGGTAGTGTCTGGCCATGCTCTTTCATACTCATAGAAGACCAAACCC CACCTCTAGAGACCACAGGCAGGGTAGCTTCAGAGGGCCAGTCTCCCCTCTTGTTTGGGG TGAAGGTATGAGAGCCACTCCCTCCCCAGTTCGCAGGACACATGGGTTGTTCCTCTGACA GATGATCTGTGAGGGCCGTGCTGACTTAGGATTCTTCTGGAAGCAGTCTATGAATCTATG CACCAAGGGTGTTTTTTAGGAGGACACCACTGATAGCATTTTAGATAAGCTATAAATAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCTGAGCTGAGCGAGGCGTGTCCAGTGGAGATGGTGAAGATGACAAAGTCCAAAACTTT CCAAGCCTACCTGCCAAATTGCCATCGAACGTACAGCTGTGTCCACTGCAGAGCCCATCT GGCCAATCACGACGAGCTGATCTCCAAGTCCTTTCAGGGGAGTCAGGGCCGAGCCTACCT CTTCAATTCTGTGGTGAATGTGGGTTGCGGCCCTGCGGAGGAGCGGGTCCTTCTCACCGG CCTGCACGCCGTGGCGGACATCTACTGCGAGAACTGCAAGACCACACTTGGGTGGAAATA TGAACATGCCTTTGAAAGCAGTCAGAAATATAAGGAAGGAAAATTTATCATTGAGCTTGC TCACATGATCAAAGACAATGGTTGGGAGTAAAGTGGAAACTTCCTGTTCCCTTTTGAATC CTATTTTCTGAAAGACGGTAAATGCAATGGGAACCTCTGGGTGACAGTATTTCTTGACCT TGAGCCTCGAAGGCTGGCCTCTATGGCCCATCCTGTGGGTAAGGTGTCCCTCCCGTCTGT GTCCTCTTCACGTACACAGTTGTTTCTGAGATGTTTCAATGACTTTTTTTTAACTTCTCA AGATCAAGCGAAAGACTTAACTGACTGATGACTTGCCCATCTAGTTAATACCTTCTTTTA ACCAATGCCTTTATGGTAGTGTCTGGCCATGCTCTTTCATACTCATAGAAGACCAAACCC CACCTCTAGAGACCACAGGCAGGGTAGCTTCAGAGGGCCAGTCTCCCCTCTTGTTTGGGG TGAAGGTATGAGAGCCACTCCCTCCCCAGTTCGCAGGACACATGGGTTGTTCCTCTGACA GATGATCTGTGAGGGCCGTGCTGACTTAGGATTCTTCTGGAAGCAGTCTATGAATCTATG CACCAAGGGTGTTTTTTAGGAGGACACCACTGATAGCATTTTAGATAAGCTATAAATAGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 1-148, gnl|bosTau2|chr17 (45463610-45463466) | |
| 1-148, gnl|canFam2|chr26 (34037584-34037891) | |
| 1-148, gnl|danRer3|chr5 (3595152-3594863) | |
| 1-148, gnl|dasNov1|scaffold_186362 (1958-2237) | |
| 1-148, gnl|echTel1|scaffold_279930 (49862-49540) | |
| 1-148, gnl|fr1|chrUn (129138108-129138401) | |
| 1-148, gnl|galGal2|chr15 (537708-537410) | |
| 1-148, gnl|hg17|chr22 (20389451-20389756) | |
| 1-148, gnl|Hg17|chr22 (20389618-20389471) | |
| 1-148, gnl|loxAfr1|scaffold_9112 (33137-33452) | |
| 1-148, gnl|mm7|chr16 (16627808-16627505) | |
| 1-148, gnl|Mm7|chr16 (16627640-16627787) | |
| 1-148, gnl|monDom2|scaffold_112 (3596321-3596620) | |
| 1-148, gnl|oryCun1|scaffold_215058 (16399-16712) | |
| 1-148, gnl|panTro1|chr23 (20416913-20417218) | |
| 1-148, gnl|rheMac2|chr10 (65463189-65463494) | |
| 1-148, gnl|rn3|chr11 (85976825-85977129) | |
| 1-148, gnl|tetNig1|chr12 (3764562-3764853) | |
| 1-148, gnl|xenTro1|scaffold_118 (272187-271908) | |
| 193-302, gnl|bosTau2|chr17 (45462391-45462282) | |
| 193-302, gnl|canFam2|chr26 (34034306-34034438) | |
| 193-302, gnl|danRer3|chr5 (3625895-3625766) | |
| 193-302, gnl|dasNov1|scaffold_37512 (4019-3884) | |
| 193-302, gnl|echTel1|scaffold_279930 (55065-54933) | |
| 193-302, gnl|fr1|chrUn (237441332-237441201) | |
| 193-302, gnl|galGal2|chr15 (544395-544269) | |
| 193-302, gnl|hg17|chr22 (20382205-20382338) | |
| 193-302, gnl|Hg17|chr22 (20382321-20382212) | |
| 193-302, gnl|loxAfr1|scaffold_9112 (20610-20742) | |
| 193-302, gnl|mm7|chr16 (16631919-16631786) | |
| 193-302, gnl|Mm7|chr16 (16631801-16631910) | |
| 193-302, gnl|monDom2|scaffold_112 (3583711-3583839) | |
| 193-302, gnl|oryCun1|scaffold_215058 (13639-13770) | |
| 193-302, gnl|panTro1|chr23 (20409573-20409706) | |
| 193-302, gnl|rheMac2|chr15 (76057421-76057315) | |
| 193-302, gnl|rn3|chr11 (85972987-85973120) | |
| 193-302, gnl|tetNig1|chr12 (3755439-3755570) | |
| 193-302, gnl|xenTro1|scaffold_118 (276833-276705) | |
| 491-805, gnl|bosTau2|chr17 (45461548-45461248) | |
| 491-805, gnl|Hg17|chr22 (20379888-20379570) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-148, gnl|bosTau2|chr17 (45463610-45463466) | |
| 1-148, gnl|canFam2|chr26 (34037584-34037891) | |
| 1-148, gnl|danRer3|chr5 (3595152-3594863) | |
| 1-148, gnl|dasNov1|scaffold_186362 (1958-2237) | |
| 1-148, gnl|echTel1|scaffold_279930 (49862-49540) | |
| 1-148, gnl|fr1|chrUn (129138108-129138401) | |
| 1-148, gnl|galGal2|chr15 (537708-537410) | |
| 1-148, gnl|hg17|chr22 (20389451-20389756) | |
| 1-148, gnl|Hg17|chr22 (20389618-20389471) | |
| 1-148, gnl|loxAfr1|scaffold_9112 (33137-33452) | |
| 1-148, gnl|mm7|chr16 (16627808-16627505) | |
| 1-148, gnl|Mm7|chr16 (16627640-16627787) | |
| 1-148, gnl|monDom2|scaffold_112 (3596321-3596620) | |
| 1-148, gnl|oryCun1|scaffold_215058 (16399-16712) | |
| 1-148, gnl|panTro1|chr23 (20416913-20417218) | |
| 1-148, gnl|rheMac2|chr10 (65463189-65463494) | |
| 1-148, gnl|rn3|chr11 (85976825-85977129) | |
| 1-148, gnl|tetNig1|chr12 (3764562-3764853) | |
| 1-148, gnl|xenTro1|scaffold_118 (272187-271908) | |
| 193-302, gnl|bosTau2|chr17 (45462391-45462282) | |
| 193-302, gnl|canFam2|chr26 (34034306-34034438) | |
| 193-302, gnl|danRer3|chr5 (3625895-3625766) | |
| 193-302, gnl|dasNov1|scaffold_37512 (4019-3884) | |
| 193-302, gnl|echTel1|scaffold_279930 (55065-54933) | |
| 193-302, gnl|fr1|chrUn (237441332-237441201) | |
| 193-302, gnl|galGal2|chr15 (544395-544269) | |
| 193-302, gnl|hg17|chr22 (20382205-20382338) | |
| 193-302, gnl|Hg17|chr22 (20382321-20382212) | |
| 193-302, gnl|loxAfr1|scaffold_9112 (20610-20742) | |
| 193-302, gnl|mm7|chr16 (16631919-16631786) | |
| 193-302, gnl|Mm7|chr16 (16631801-16631910) | |
| 193-302, gnl|monDom2|scaffold_112 (3583711-3583839) | |
| 193-302, gnl|oryCun1|scaffold_215058 (13639-13770) | |
| 193-302, gnl|panTro1|chr23 (20409573-20409706) | |
| 193-302, gnl|rheMac2|chr15 (76057421-76057315) | |
| 193-302, gnl|rn3|chr11 (85972987-85973120) | |
| 193-302, gnl|tetNig1|chr12 (3755439-3755570) | |
| 193-302, gnl|xenTro1|scaffold_118 (276833-276705) | |
| 491-805, gnl|bosTau2|chr17 (45461548-45461248) | |
| 491-805, gnl|Hg17|chr22 (20379888-20379570) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| cte (0.87822) | |
| tes (0.415628) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| ecc (0.115035) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.87822) | |
| tes (0.415628) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| ecc (0.115035) |