Ss1.1-recc2809c_k23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGTGGCTCCCCCGCCCCGGCAGCCTTGCTCCTCCCTGGGCCCGGGAGCCAGTGAGGCCC GGCCTGTGGTCTGCGAGAGGCATCGTGTGGTCGTTTCCTACCCTCCCCAGAGTGAGGCAG AACTTGAGCTCAAGGAAGGGGATATCGTGTTTGTGCACAAGAAGCGGGGGGACGGCTGGT TCAAGGGCACGCTGCAGCGGAACGGGAAGACGGGGCTCTTCCCCGGGAGCTTCGTGGAGA ACATCTGAGGAGGCGCCAGAGGCAGGGACGTCCCTCAGCCCCGCACTTGGCTGGGAGAGG AGCGCCCGCCTCATCCTGAGTCACTCCACAGAGGAACCCCCTTCTGAAATATCAGCTGAA GTGGACGGTTGTTTACACGGCATCACTAATTTATTTGCTTTCTTAAACTTGAATTTTTCT TGTACTAGATCAACTCTTTGGGTTGTGATTTAAAGAAATTATTAATTTATGAAATGGTAG CCTAGGAGAGGCCGTGAGGTCACCCGCCAGGAGGGAGGTCCTTCCTGATGCTGGACGCGG GGCATCTCGCTGGTGGGGTCGGGATTCACCCCAAGACCTCATCCCTCAACCCCGAGGGCT TCTGGCTGCCGAGGACGAGGGAGCATAAAGCACAGCCCTGAACACACCGTGTTCAGAAGT AGATTTAGTTTAAAACAGAAGCCGCTCAACTCACAGCTTGGAAGTGGGTGGATGGAGGTT GTCCCCAGCATGAGACGGCTCTGAGGGTCACCCTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGTGGCTCCCCCGCCCCGGCAGCCTTGCTCCTCCCTGGGCCCGGGAGCCAGTGAGGCCC GGCCTGTGGTCTGCGAGAGGCATCGTGTGGTCGTTTCCTACCCTCCCCAGAGTGAGGCAG AACTTGAGCTCAAGGAAGGGGATATCGTGTTTGTGCACAAGAAGCGGGGGGACGGCTGGT TCAAGGGCACGCTGCAGCGGAACGGGAAGACGGGGCTCTTCCCCGGGAGCTTCGTGGAGA ACATCTGAGGAGGCGCCAGAGGCAGGGACGTCCCTCAGCCCCGCACTTGGCTGGGAGAGG AGCGCCCGCCTCATCCTGAGTCACTCCACAGAGGAACCCCCTTCTGAAATATCAGCTGAA GTGGACGGTTGTTTACACGGCATCACTAATTTATTTGCTTTCTTAAACTTGAATTTTTCT TGTACTAGATCAACTCTTTGGGTTGTGATTTAAAGAAATTATTAATTTATGAAATGGTAG CCTAGGAGAGGCCGTGAGGTCACCCGCCAGGAGGGAGGTCCTTCCTGATGCTGGACGCGG GGCATCTCGCTGGTGGGGTCGGGATTCACCCCAAGACCTCATCCCTCAACCCCGAGGGCT TCTGGCTGCCGAGGACGAGGGAGCATAAAGCACAGCCCTGAACACACCGTGTTCAGAAGT AGATTTAGTTTAAAACAGAAGCCGCTCAACTCACAGCTTGGAAGTGGGTGGATGGAGGTT GTCCCCAGCATGAGACGGCTCTGAGGGTCACCCTGG |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 78-257, gnl|bosTau2|chr8 (284388-284567) | |
| 78-257, gnl|canFam2|chr25 (23010095-23010284) | |
| 78-257, gnl|danRer3|chr20 (32778714-32778884) | |
| 78-257, gnl|dasNov1|scaffold_6244 (122471-122284) | |
| 78-257, gnl|echTel1|scaffold_314813 (45646-45835) | |
| 78-257, gnl|fr1|chrUn (37694636-37694830) | |
| 78-257, gnl|galGal2|chr4 (26040090-26039894) | |
| 78-257, gnl|hg17|chr4 (170392395-170392586) | |
| 78-257, gnl|Hg17|chr4 (170392570-170392394) | |
| 78-257, gnl|loxAfr1|scaffold_9678 (17840-17659) | |
| 78-257, gnl|mm7|chr8 (59803068-59802879) | |
| 78-257, gnl|Mm7|chr8 (59802891-59803068) | |
| 78-257, gnl|monDom2|scaffold_9 (45162796-45162987) | |
| 78-257, gnl|oryCun1|scaffold_181805 (10422-10230) | |
| 78-257, gnl|panTro1|chr3 (188049295-188049486) | |
| 78-257, gnl|rheMac2|chr5 (161231050-161231241) | |
| 78-257, gnl|rn3|chr16 (32054843-32055033) | |
| 78-257, gnl|tetNig1|chr1_random (1730612-1730442) | |
| 78-257, gnl|xenTro1|scaffold_25 (2817320-2817134) | |
| 354-513, gnl|bosTau2|chr8 (284682-284841) | |
| 354-513, gnl|canFam2|chr25 (23009622-23009733) | |
| 354-513, gnl|echTel1|scaffold_314813 (45226-45332) | |
| 354-513, gnl|galGal2|chr4 (26040520-26040411) | |
| 354-513, gnl|hg17|chr4 (170391957-170392068) | |
| 354-513, gnl|Hg17|chr4 (170392126-170391967) | |
| 354-513, gnl|loxAfr1|scaffold_2115 (52775-52886) | |
| 354-513, gnl|mm7|chr8 (59803514-59803400) | |
| 354-513, gnl|Mm7|chr8 (59803340-59803502) | |
| 354-513, gnl|monDom2|scaffold_9 (45162363-45162469) | |
| 354-513, gnl|oryCun1|scaffold_181805 (10855-10744) | |
| 354-513, gnl|panTro1|chr3 (188048856-188048967) | |
| 354-513, gnl|rheMac2|chr5 (161230611-161230722) | |
| 354-513, gnl|rn3|chr16 (32054400-32054514) | |
| 354-513, gnl|xenTro1|scaffold_25 (2817780-2817652) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 78-257, gnl|bosTau2|chr8 (284388-284567) | |
| 78-257, gnl|canFam2|chr25 (23010095-23010284) | |
| 78-257, gnl|danRer3|chr20 (32778714-32778884) | |
| 78-257, gnl|dasNov1|scaffold_6244 (122471-122284) | |
| 78-257, gnl|echTel1|scaffold_314813 (45646-45835) | |
| 78-257, gnl|fr1|chrUn (37694636-37694830) | |
| 78-257, gnl|galGal2|chr4 (26040090-26039894) | |
| 78-257, gnl|hg17|chr4 (170392395-170392586) | |
| 78-257, gnl|Hg17|chr4 (170392570-170392394) | |
| 78-257, gnl|loxAfr1|scaffold_9678 (17840-17659) | |
| 78-257, gnl|mm7|chr8 (59803068-59802879) | |
| 78-257, gnl|Mm7|chr8 (59802891-59803068) | |
| 78-257, gnl|monDom2|scaffold_9 (45162796-45162987) | |
| 78-257, gnl|oryCun1|scaffold_181805 (10422-10230) | |
| 78-257, gnl|panTro1|chr3 (188049295-188049486) | |
| 78-257, gnl|rheMac2|chr5 (161231050-161231241) | |
| 78-257, gnl|rn3|chr16 (32054843-32055033) | |
| 78-257, gnl|tetNig1|chr1_random (1730612-1730442) | |
| 78-257, gnl|xenTro1|scaffold_25 (2817320-2817134) | |
| 354-513, gnl|bosTau2|chr8 (284682-284841) | |
| 354-513, gnl|canFam2|chr25 (23009622-23009733) | |
| 354-513, gnl|echTel1|scaffold_314813 (45226-45332) | |
| 354-513, gnl|galGal2|chr4 (26040520-26040411) | |
| 354-513, gnl|hg17|chr4 (170391957-170392068) | |
| 354-513, gnl|Hg17|chr4 (170392126-170391967) | |
| 354-513, gnl|loxAfr1|scaffold_2115 (52775-52886) | |
| 354-513, gnl|mm7|chr8 (59803514-59803400) | |
| 354-513, gnl|Mm7|chr8 (59803340-59803502) | |
| 354-513, gnl|monDom2|scaffold_9 (45162363-45162469) | |
| 354-513, gnl|oryCun1|scaffold_181805 (10855-10744) | |
| 354-513, gnl|panTro1|chr3 (188048856-188048967) | |
| 354-513, gnl|rheMac2|chr5 (161230611-161230722) | |
| 354-513, gnl|rn3|chr16 (32054400-32054514) | |
| 354-513, gnl|xenTro1|scaffold_25 (2817780-2817652) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| pla (0.267344) | |
| nmm (0.132802) | |
| ebs (0.118301) | |
| ecc (0.115035) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) | |
| nmm (0.132802) | |
| ebs (0.118301) | |
| ecc (0.115035) |