Non-Coding RNA Search

Ss1.1-recc2809c_n6.5

Sequence:


               
               TGTTGGCTTGTAAAGCATTGATGTCATTTTTTTTTTTTGTGGACTATTTAGATGTGTTTG
TGTTCAGCAAAATGTGATTTTTTTTTTTCTTTTAAAGAAAAAGTGAAAATATATAGTGCC
AAATTCCAAAGGTACTTCCTTCCTAGAGCTTCAGTGTGTTTCTTGTGAGAAGTAATTTGA
TAACATGGGTATTTTATTATGTGTTTTGTATAAATCCCTAATATTTAAAAAACAAAAAAC
AAAAAAAAAGAGGTTAAAAAGTTTGTTAACTTGCTATCCTGTGGTCTTGTTGCCTGAAAT
TGTTATTGTTTGTTATTTCTCTATGACGTTTTTTGTAAGACATTGTATAAGTGCCCATGT
CTCACTTTTTTAACCACTCTGCACATCAATGCTGTGACGGCAACCTCACAATGTATTTTC
TTCATAATATATGGAAACCTCTAAGGTGAGAAAGTTTTGAACTTTTAACCCTTTCTACCC
AGAGCTATCTGGAATGTCGATAACTTTTTATACTGTCATCATTTTCATTTGTTTTGGGGT
GTTTCCAATTTGAAGTTTTTTTCCATATATATCCTTGAGTTGTTTTGTCTTTACTACTTT
TTTATCCTTTGGTTGGGATTCAAAAGCAAAATCTTAAAAACAAAAAGAGGGTTAAAGTAT
TATTATTATTTTTTTCCTTCAAATTCCTCATTTGCTGCTGGAATTCCTTCTTCGGCTTTG
GTTAAAAAGAGTTTACTGGGTACATTTTCCGAGGGGAATGGTAGATAGTCAAGCACCTGA
ATGAACCTTAAATTCAGCACATGTTAGAGATCGGATTAATGGTAAATTCCAGTTTGAACT
ATTTTCGTGTACCTTCCAGTGAAATGGCTTTGTGAGGATGCGGTAGACTTTGGAGGGATG
TTTGCTTTTATTTCTTAAATGCTCCTAAATTTATGTCTTTGCTCAGCCATTGTGCTGGGG
ATTCTGAGCCCAGTGGATACCTCTGAATAAGCAAGGTGTCTGGAGTTAGAAGTTGACAGT
CCTTTTCTTGTCTTTGTTTCTTTTGAATCAAATGCATCTAAAGGGGCCTGACCGTTCAAG
GCAAACTCAGTTCTTCATCGTTACTGGCAAACACTGGTTCCCGCCGCCACTTTGCAAAGT
GCCATCTTTCTTTGACTTCTACTTCACGTGTGAATGTGAACGGTCTCTTGTTGTCCTGGC
AAACCCCAAAGTTACCTACCCCCCACAGCCCCAACACAAGCTCCTGCCTTTCTGGAAGCT
TCTTTGTCTCTCCTGGAGTTTAGAAACTGCTGGCTCCCCTTCCCACTCACCACTCTGTTT
GATTTCATGTGTGCTGTGGATGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTGGCTTGTAAAGCATTGATGTCATTTTTTTTTTTTGTGGACTATTTAGATGTGTTTG
TGTTCAGCAAAATGTGATTTTTTTTTTTCTTTTAAAGAAAAAGTGAAAATATATAGTGCC
AAATTCCAAAGGTACTTCCTTCCTAGAGCTTCAGTGTGTTTCTTGTGAGAAGTAATTTGA
TAACATGGGTATTTTATTATGTGTTTTGTATAAATCCCTAATATTTAAAAAACAAAAAAC
AAAAAAAAAGAGGTTAAAAAGTTTGTTAACTTGCTATCCTGTGGTCTTGTTGCCTGAAAT
TGTTATTGTTTGTTATTTCTCTATGACGTTTTTTGTAAGACATTGTATAAGTGCCCATGT
CTCACTTTTTTAACCACTCTGCACATCAATGCTGTGACGGCAACCTCACAATGTATTTTC
TTCATAATATATGGAAACCTCTAAGGTGAGAAAGTTTTGAACTTTTAACCCTTTCTACCC
AGAGCTATCTGGAATGTCGATAACTTTTTATACTGTCATCATTTTCATTTGTTTTGGGGT
GTTTCCAATTTGAAGTTTTTTTCCATATATATCCTTGAGTTGTTTTGTCTTTACTACTTT
TTTATCCTTTGGTTGGGATTCAAAAGCAAAATCTTAAAAACAAAAAGAGGGTTAAAGTAT
TATTATTATTTTTTTCCTTCAAATTCCTCATTTGCTGCTGGAATTCCTTCTTCGGCTTTG
GTTAAAAAGAGTTTACTGGGTACATTTTCCGAGGGGAATGGTAGATAGTCAAGCACCTGA
ATGAACCTTAAATTCAGCACATGTTAGAGATCGGATTAATGGTAAATTCCAGTTTGAACT
ATTTTCGTGTACCTTCCAGTGAAATGGCTTTGTGAGGATGCGGTAGACTTTGGAGGGATG
TTTGCTTTTATTTCTTAAATGCTCCTAAATTTATGTCTTTGCTCAGCCATTGTGCTGGGG
ATTCTGAGCCCAGTGGATACCTCTGAATAAGCAAGGTGTCTGGAGTTAGAAGTTGACAGT
CCTTTTCTTGTCTTTGTTTCTTTTGAATCAAATGCATCTAAAGGGGCCTGACCGTTCAAG
GCAAACTCAGTTCTTCATCGTTACTGGCAAACACTGGTTCCCGCCGCCACTTTGCAAAGT
GCCATCTTTCTTTGACTTCTACTTCACGTGTGAATGTGAACGGTCTCTTGTTGTCCTGGC
AAACCCCAAAGTTACCTACCCCCCACAGCCCCAACACAAGCTCCTGCCTTTCTGGAAGCT
TCTTTGTCTCTCCTGGAGTTTAGAAACTGCTGGCTCCCCTTCCCACTCACCACTCTGTTT
GATTTCATGTGTGCTGTGGATGTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               271-390, - strand, RNAz p=0.740954
               

               
               430-549, - strand, RNAz p=0.978652

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               271-390, - strand, RNAz p=0.740954
               

               
               430-549, - strand, RNAz p=0.978652

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-629, gnl|bosTau2|chr13 (5640254-5639619)
               

               
               1-629, gnl|Hg17|chr10 (11413348-11413974)
               

               
               1-629, gnl|Mm7|chr2 (6461995-6461295)
               


               
               754-1106, gnl|bosTau2|chr13 (5639595-5639240)
               

               
               754-1106, gnl|Hg17|chr10 (11414127-11414461)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-629, gnl|bosTau2|chr13 (5640254-5639619)
               

               
               1-629, gnl|Hg17|chr10 (11413348-11413974)
               

               
               1-629, gnl|Mm7|chr2 (6461995-6461295)
               


               
               754-1106, gnl|bosTau2|chr13 (5639595-5639240)
               

               
               754-1106, gnl|Hg17|chr10 (11414127-11414461)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               cbl (1.03318)
               

               
               ecc (0.575175)
               

               
               fty (0.351679)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               fhi (0.169578)
               

               
               liv (0.146284)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               ldo (0.0970026)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (1.03318)
               

               
               ecc (0.575175)
               

               
               fty (0.351679)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               fhi (0.169578)
               

               
               liv (0.146284)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               ldo (0.0970026)

	271-390, - strand, RNAz p=0.740954
	430-549, - strand, RNAz p=0.978652

	1-629, gnl\|bosTau2\|chr13 (5640254-5639619)
	1-629, gnl\|Hg17\|chr10 (11413348-11413974)
	1-629, gnl\|Mm7\|chr2 (6461995-6461295)

	754-1106, gnl\|bosTau2\|chr13 (5639595-5639240)
	754-1106, gnl\|Hg17\|chr10 (11414127-11414461)

	cbl (1.03318)
	ecc (0.575175)
	fty (0.351679)
	med (0.232504)
	ece (0.229305)
	mas (0.210305)
	fhi (0.169578)
	liv (0.146284)
	thg (0.126791)
	bla (0.124347)
	ldo (0.0970026)