Ss1.1-recc2810c_a11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGCCGTGTGTGCCTGGGGATCCTGGGGACGCAGGGTGACTGGTGGCAGTCTCTCCACTG CCGCCGGCAGCTCTGCGGCTGTCCGACTGGGACTTGGCTGTCTTGCCCCGGGTCTGCGCT CGCCCTTCCTCGGTCTCCGGCCGCATATCTCCGGGCTTCGCTGCGTCTTCCAGTCTCTGA CTCTGTGTCTGTGCGCCCCGCCCCCGCCCCGCAGACGTGTCCCGGGCGGTGGAGCTCCTC GAGCGGCTCCAGCGCAGCGGGGAGCTGCCCCCGCAGAAGCTGCAGGCCCTCCAGCGAGTC CTGCAGAGCCGCTTCTGCTCTGCCATCCGGGAGGTGTATGAGCAGCTCTATGACACGCTG GACATCACCGGCAGTGCTGAGGTCCGGGCCCACGCCACGGCCAAGGCCACGGTGGCTGCC TTCACGGCCAGTGAGGGCCACGCACATCCCCGGGTAGTCGAACTGCCCAAGACGGACGAG GGCTTAGGCTTCAACATCATGGGGGGCAAGGAGCAGAATTCGCCCATCTACATCTCCCGG GTCATCCCCGGCGGCGTGGCTGACCGCCACGGAGGCCTCAAGCGTGGGGACCAGCTGCTG TCAGTGAATGGTGTGAGCGTGGAGGGTGAGCAGCACGAGAAGGCAGTGGAGCTGCTGAAG GCCGCCCAGGGCTCTGTGAAGCTGGTGGTGCGTTACACCCCTCGGGTACTGGAGGAGATG GAGGCTCGCTTTGAGAAGATGCGCTCTGCCCGCCGGCGCCAGCAACATCAGAGCTACTCG TCCTTGGAGTCTCGAGGCTGAAACCACAGATCTGGACCTTCACCCCCTCCCCTGTACAGT ATTTATGTCACCAGCTCCTTATTTAAAGATCTTTGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGCCGTGTGTGCCTGGGGATCCTGGGGACGCAGGGTGACTGGTGGCAGTCTCTCCACTG CCGCCGGCAGCTCTGCGGCTGTCCGACTGGGACTTGGCTGTCTTGCCCCGGGTCTGCGCT CGCCCTTCCTCGGTCTCCGGCCGCATATCTCCGGGCTTCGCTGCGTCTTCCAGTCTCTGA CTCTGTGTCTGTGCGCCCCGCCCCCGCCCCGCAGACGTGTCCCGGGCGGTGGAGCTCCTC GAGCGGCTCCAGCGCAGCGGGGAGCTGCCCCCGCAGAAGCTGCAGGCCCTCCAGCGAGTC CTGCAGAGCCGCTTCTGCTCTGCCATCCGGGAGGTGTATGAGCAGCTCTATGACACGCTG GACATCACCGGCAGTGCTGAGGTCCGGGCCCACGCCACGGCCAAGGCCACGGTGGCTGCC TTCACGGCCAGTGAGGGCCACGCACATCCCCGGGTAGTCGAACTGCCCAAGACGGACGAG GGCTTAGGCTTCAACATCATGGGGGGCAAGGAGCAGAATTCGCCCATCTACATCTCCCGG GTCATCCCCGGCGGCGTGGCTGACCGCCACGGAGGCCTCAAGCGTGGGGACCAGCTGCTG TCAGTGAATGGTGTGAGCGTGGAGGGTGAGCAGCACGAGAAGGCAGTGGAGCTGCTGAAG GCCGCCCAGGGCTCTGTGAAGCTGGTGGTGCGTTACACCCCTCGGGTACTGGAGGAGATG GAGGCTCGCTTTGAGAAGATGCGCTCTGCCCGCCGGCGCCAGCAACATCAGAGCTACTCG TCCTTGGAGTCTCGAGGCTGAAACCACAGATCTGGACCTTCACCCCCTCCCCTGTACAGT ATTTATGTCACCAGCTCCTTATTTAAAGATCTTTGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 214-336, + strand, RNAz p=0.880128 | |
| 401-559, + strand, RNAz p=0.699227 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 214-336, + strand, RNAz p=0.880128 | |
| 401-559, + strand, RNAz p=0.699227 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 145-336, gnl|bosTau2|chr18 (48248577-48248769) | |
| 145-336, gnl|Hg17|chr19 (54309858-54310039) | |
| 145-336, gnl|Mm7|chr7 (41546094-41545852) | |
| 401-630, gnl|bosTau2|chr18 (48249858-48250089) | |
| 401-630, gnl|canFam2|chr1 (110221816-110221588) | |
| 401-630, gnl|danRer3|chr3 (28642177-28641954) | |
| 401-630, gnl|dasNov1|scaffold_4617 (12108-11884) | |
| 401-630, gnl|echTel1|scaffold_298398 (2694-2923) | |
| 401-630, gnl|fr1|chrUn (226350227-226350008) | |
| 401-630, gnl|galGal2|chr3 (44811708-44811935) | |
| 401-630, gnl|hg17|chr19 (54311319-54311548) | |
| 401-630, gnl|Hg17|chr19 (54311327-54311558) | |
| 401-630, gnl|loxAfr1|scaffold_19673 (30649-30878) | |
| 401-630, gnl|mm7|chr7 (41545093-41544864) | |
| 401-630, gnl|Mm7|chr7 (41545083-41544856) | |
| 401-630, gnl|monDom2|scaffold_10 (72905931-72905703) | |
| 401-630, gnl|oryCun1|scaffold_118321 (10156-9931) | |
| 401-630, gnl|panTro1|chr20_random (24904555-24904326) | |
| 401-630, gnl|rheMac2|chr19 (55393962-55394191) | |
| 401-630, gnl|rn3|chr1 (95918257-95918028) | |
| 401-630, gnl|tetNig1|chr3_random (7796-7579) | |
| 401-630, gnl|xenTro1|scaffold_98 (1685859-1686080) | |
| 404-615, gnl|bosTau2|chr15 (36477412-36477623) | |
| 404-615, gnl|canFam2|chr21 (51260108-51260336) | |
| 404-615, gnl|danRer3|chr7 (22057473-22057698) | |
| 404-615, gnl|dasNov1|scaffold_4617 (11882-12110) | |
| 404-615, gnl|echTel1|scaffold_318695 (137880-137652) | |
| 404-615, gnl|fr1|chrUn (226350008-226350231) | |
| 404-615, gnl|galGal2|chr3 (44811937-44811711) | |
| 404-615, gnl|hg17|chr11 (27477476-27477704) | |
| 404-615, gnl|Hg17|chr11 (27477693-27477482) | |
| 404-615, gnl|loxAfr1|scaffold_40076 (1972-2200) | |
| 404-615, gnl|mm7|chr2 (109747240-109747012) | |
| 404-615, gnl|Mm7|chr2 (109747021-109747232) | |
| 404-615, gnl|monDom2|scaffold_10 (72905701-72905939) | |
| 404-615, gnl|oryCun1|scaffold_212415 (53267-53039) | |
| 404-615, gnl|panTro1|chr9 (27775319-27775547) | |
| 404-615, gnl|rheMac2|chr14 (44305547-44305319) | |
| 404-615, gnl|rn3|chr3 (95230912-95230684) | |
| 404-615, gnl|tetNig1|chrUn_random (102073122-102072897) | |
| 404-615, gnl|xenTro1|scaffold_4 (1312470-1312702) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 145-336, gnl|bosTau2|chr18 (48248577-48248769) | |
| 145-336, gnl|Hg17|chr19 (54309858-54310039) | |
| 145-336, gnl|Mm7|chr7 (41546094-41545852) | |
| 401-630, gnl|bosTau2|chr18 (48249858-48250089) | |
| 401-630, gnl|canFam2|chr1 (110221816-110221588) | |
| 401-630, gnl|danRer3|chr3 (28642177-28641954) | |
| 401-630, gnl|dasNov1|scaffold_4617 (12108-11884) | |
| 401-630, gnl|echTel1|scaffold_298398 (2694-2923) | |
| 401-630, gnl|fr1|chrUn (226350227-226350008) | |
| 401-630, gnl|galGal2|chr3 (44811708-44811935) | |
| 401-630, gnl|hg17|chr19 (54311319-54311548) | |
| 401-630, gnl|Hg17|chr19 (54311327-54311558) | |
| 401-630, gnl|loxAfr1|scaffold_19673 (30649-30878) | |
| 401-630, gnl|mm7|chr7 (41545093-41544864) | |
| 401-630, gnl|Mm7|chr7 (41545083-41544856) | |
| 401-630, gnl|monDom2|scaffold_10 (72905931-72905703) | |
| 401-630, gnl|oryCun1|scaffold_118321 (10156-9931) | |
| 401-630, gnl|panTro1|chr20_random (24904555-24904326) | |
| 401-630, gnl|rheMac2|chr19 (55393962-55394191) | |
| 401-630, gnl|rn3|chr1 (95918257-95918028) | |
| 401-630, gnl|tetNig1|chr3_random (7796-7579) | |
| 401-630, gnl|xenTro1|scaffold_98 (1685859-1686080) | |
| 404-615, gnl|bosTau2|chr15 (36477412-36477623) | |
| 404-615, gnl|canFam2|chr21 (51260108-51260336) | |
| 404-615, gnl|danRer3|chr7 (22057473-22057698) | |
| 404-615, gnl|dasNov1|scaffold_4617 (11882-12110) | |
| 404-615, gnl|echTel1|scaffold_318695 (137880-137652) | |
| 404-615, gnl|fr1|chrUn (226350008-226350231) | |
| 404-615, gnl|galGal2|chr3 (44811937-44811711) | |
| 404-615, gnl|hg17|chr11 (27477476-27477704) | |
| 404-615, gnl|Hg17|chr11 (27477693-27477482) | |
| 404-615, gnl|loxAfr1|scaffold_40076 (1972-2200) | |
| 404-615, gnl|mm7|chr2 (109747240-109747012) | |
| 404-615, gnl|Mm7|chr2 (109747021-109747232) | |
| 404-615, gnl|monDom2|scaffold_10 (72905701-72905939) | |
| 404-615, gnl|oryCun1|scaffold_212415 (53267-53039) | |
| 404-615, gnl|panTro1|chr9 (27775319-27775547) | |
| 404-615, gnl|rheMac2|chr14 (44305547-44305319) | |
| 404-615, gnl|rn3|chr3 (95230912-95230684) | |
| 404-615, gnl|tetNig1|chrUn_random (102073122-102072897) | |
| 404-615, gnl|xenTro1|scaffold_4 (1312470-1312702) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| fcc (0.39557) | |
| ece (0.229305) | |
| hea (0.204499) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| ecc (0.115035) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.39557) | |
| ece (0.229305) | |
| hea (0.204499) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| ecc (0.115035) |