Non-Coding RNA Search

Ss1.1-recc2810c_c19.5

Sequence:


               
               GGCTGGGCGCCTGCCTCCTGCTCCTCCAGAGCGGCTATAAGATCCCCCTGCCCAACGGGA
CCTCCCTATAGCCCTGGCACTGCATCTAGACTTGCACCTCTTTGGTCCAGTGGGTGGGGA
CGAGGCGCTCATTCTCTGACTCCTGGGGCATTTCGTTCCCAGCTCGGTGTCAACTAGTTA
CGTTCCCAGAACTGGGCCAGATGTCCCCCACCTATGTGACCCACACTGCCTTTGTCACAG
TGCCGGCCAGAGCTGGATGGTGAAGCCGGCAACCACCCCCAACCCCACGGGGCTGCTGGC
AGCTGCCCTGGCCTCTCCCCGCTGGTGGAAGAGACCAGGCCTCCTCCCGTGCCTGGTCAC
CACAGGGGTAGCAGGTGATTTTTGCAAGGGGTTTCCCTCTCACACGGCCTCAGTGCTCAC
AAGAACTTTGTGCTCTGGGTGTTACAGGGCCCCCATTCTGCAGATGTGAAAACTGAGGCA
CCAAGAGGCAAAGTGAGTGACCTGTAACTGGGTCAGCAGCACAGCCAGAGCTGCCTCCCT
TGGGGACTTTGCAGGAAGAGCACAGTAGGGTCAACGGCAGGGCCTCGCACCCCCTGCCCC
CTCCTTCCCCATCAGCTTATGGCAACCAGCACTGGCTGGTCCTCTGGTCCTCCCTGGGCC
TTTTGGTCCTGGCCAGGGAGAAGGAGGGACCAGCCTGGGGTACTGCATGACCCATCCCCG
GCCCCAGCCTTGAGGTGCTCCTGCTCTCCGGAAGCCGTGGGGCCCCAGCACAGCCTCCCT
CACAGATTTGAGCCCCCACCTCCTCCACTCGGCTCTAGGGGTGGAATTTGGGGGAGGGGG
CAGCCCCAGGGAAGGGGCGCTGGCTACGCCTGCCGCCTGTTCACAGCAGGCGGTTCTTAT
CCAAGTGAAATGAAAATGCAGACTGCCGTCATTAACACGAGCATTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTGGGCGCCTGCCTCCTGCTCCTCCAGAGCGGCTATAAGATCCCCCTGCCCAACGGGA
CCTCCCTATAGCCCTGGCACTGCATCTAGACTTGCACCTCTTTGGTCCAGTGGGTGGGGA
CGAGGCGCTCATTCTCTGACTCCTGGGGCATTTCGTTCCCAGCTCGGTGTCAACTAGTTA
CGTTCCCAGAACTGGGCCAGATGTCCCCCACCTATGTGACCCACACTGCCTTTGTCACAG
TGCCGGCCAGAGCTGGATGGTGAAGCCGGCAACCACCCCCAACCCCACGGGGCTGCTGGC
AGCTGCCCTGGCCTCTCCCCGCTGGTGGAAGAGACCAGGCCTCCTCCCGTGCCTGGTCAC
CACAGGGGTAGCAGGTGATTTTTGCAAGGGGTTTCCCTCTCACACGGCCTCAGTGCTCAC
AAGAACTTTGTGCTCTGGGTGTTACAGGGCCCCCATTCTGCAGATGTGAAAACTGAGGCA
CCAAGAGGCAAAGTGAGTGACCTGTAACTGGGTCAGCAGCACAGCCAGAGCTGCCTCCCT
TGGGGACTTTGCAGGAAGAGCACAGTAGGGTCAACGGCAGGGCCTCGCACCCCCTGCCCC
CTCCTTCCCCATCAGCTTATGGCAACCAGCACTGGCTGGTCCTCTGGTCCTCCCTGGGCC
TTTTGGTCCTGGCCAGGGAGAAGGAGGGACCAGCCTGGGGTACTGCATGACCCATCCCCG
GCCCCAGCCTTGAGGTGCTCCTGCTCTCCGGAAGCCGTGGGGCCCCAGCACAGCCTCCCT
CACAGATTTGAGCCCCCACCTCCTCCACTCGGCTCTAGGGGTGGAATTTGGGGGAGGGGG
CAGCCCCAGGGAAGGGGCGCTGGCTACGCCTGCCGCCTGTTCACAGCAGGCGGTTCTTAT
CCAAGTGAAATGAAAATGCAGACTGCCGTCATTAACACGAGCATTTTG

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               40-156, - strand, RNAz p=0.628433
               

               
               194-390, - strand, RNAz p=0.97294
               

               
               563-743, - strand, RNAz p=0.999945

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-156, - strand, RNAz p=0.628433
               

               
               194-390, - strand, RNAz p=0.97294
               

               
               563-743, - strand, RNAz p=0.999945

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               678-752, - strand, RNAmicro p=0.999959

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               678-752, - strand, RNAmicro p=0.999959

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-947, gnl|bosTau2|chr16 (21785426-21784472)
               

               
               1-947, gnl|Hg17|chr1 (11530939-11531901)
               

               
               1-947, gnl|Mm7|chr4 (147230868-147230061)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-947, gnl|bosTau2|chr16 (21785426-21784472)
               

               
               1-947, gnl|Hg17|chr1 (11530939-11531901)
               

               
               1-947, gnl|Mm7|chr4 (147230868-147230061)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)
               

               
               ecc (0.115035)

	40-156, - strand, RNAz p=0.628433
	194-390, - strand, RNAz p=0.97294
	563-743, - strand, RNAz p=0.999945

	1-947, gnl\|bosTau2\|chr16 (21785426-21784472)
	1-947, gnl\|Hg17\|chr1 (11530939-11531901)
	1-947, gnl\|Mm7\|chr4 (147230868-147230061)