Non-Coding RNA Search

Ss1.1-recc2810c_d21.5

Sequence:


               
               CAAGGAACAAAATGATCGCATGGTGTCCACAGAACACTGCCGCTCTCCTACTGTGGAATG
ATGTTCTAACCACTTCTCAGAGACACTTTTAAAAGTTATTTATTGAAAAATGTTCTATGC
ATCTAAAATTTTAAAGAATCAACCTAAAGAAAACCTATGATTGGACTTAGTTTTCAACCA
TTTAACACTTACCCCAGGTACCCAGGTTTAATAATTTATAGAAAAAAGTCAAATGTCAAC
ACTTCTTACTTTCTGTCATTTTGTAGATCCTTTTTTAATACTGTGTAAAAACTTTTTTTT
TACACTTAAGCTGTGTTTTTGATACCGATATTTTCCTATGCTGAATAGTTTTCTTACTTT
CAGGGAAAGTAAGAAAGTACCTTTTTTACATTTGTTACTTATGTAACATTCATATTTTTC
ACATTTTGATATTTGTAACATAATGTATGCTTTCTACTTTTAAATGCCAACAATAGAATT
AAAATATTTATTTAAAATAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGGAACAAAATGATCGCATGGTGTCCACAGAACACTGCCGCTCTCCTACTGTGGAATG
ATGTTCTAACCACTTCTCAGAGACACTTTTAAAAGTTATTTATTGAAAAATGTTCTATGC
ATCTAAAATTTTAAAGAATCAACCTAAAGAAAACCTATGATTGGACTTAGTTTTCAACCA
TTTAACACTTACCCCAGGTACCCAGGTTTAATAATTTATAGAAAAAAGTCAAATGTCAAC
ACTTCTTACTTTCTGTCATTTTGTAGATCCTTTTTTAATACTGTGTAAAAACTTTTTTTT
TACACTTAAGCTGTGTTTTTGATACCGATATTTTCCTATGCTGAATAGTTTTCTTACTTT
CAGGGAAAGTAAGAAAGTACCTTTTTTACATTTGTTACTTATGTAACATTCATATTTTTC
ACATTTTGATATTTGTAACATAATGTATGCTTTCTACTTTTAAATGCCAACAATAGAATT
AAAATATTTATTTAAAATAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               275-457, + strand, RNAz p=0.989631

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               275-457, + strand, RNAz p=0.989631

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-499, gnl|bosTau2|chr20 (25451611-25451106)
               

               
               4-499, gnl|Hg17|chr4 (126771202-126771692)
               

               
               4-499, gnl|Mm7|chr3 (38828662-38829167)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-499, gnl|bosTau2|chr20 (25451611-25451106)
               

               
               4-499, gnl|Hg17|chr4 (126771202-126771692)
               

               
               4-499, gnl|Mm7|chr3 (38828662-38829167)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)
               

               
               spc (0.113366)

	4-499, gnl\|bosTau2\|chr20 (25451611-25451106)
	4-499, gnl\|Hg17\|chr4 (126771202-126771692)
	4-499, gnl\|Mm7\|chr3 (38828662-38829167)