Non-Coding RNA Search

Ss1.1-recc2810c_e9.5

Sequence:


               
               CCCCATTAGAACATTCATCCAAGTTCAGTGTGTAGTGTGATGGTTACTATAGATGTTTAA
AAGTATAGTAAGTGGCTGTGTAACAAGAGATACTGCTATTTACCTATGGACTTAAAGGTA
ACTCCTGCCCATGTAATCAAATCAGTATTGTCCTTTCCTGTCGGTTTGATCAGTTGCAGT
ACTGGTGGCTTCCTGCTTGTGACTGTTACCTAATCGTGTCAATGTACATCTGTAGTATGT
ACATGTGAAAGTGCCTTTCTATTTTAGAGGAGTTTTAGCCTTGCTCTCTACTGTTGCCCC
GCCCACCTCCACTCCCTGCCCCCATTTCTCCACCCACTTGAGTGTTTTGGAATTTCCTCT
GCTCTCTCCCAGCTTCTTCACCATCCCCATCTTTCTGTGCCTCAGTGCTCAGTATTGTCC
CGTCTTGCATCCTTGTCTGCCATCAGGCACGTCATTTTCCTCGTGTGTCCTTTTCCTCTT
AGCCATGACTGTGCCTTTCCCTCCCCAAAGTAACTCCAGGTCTCCCACACCTCACCACCC
CTCCCCTGCTCACGTGCTGCTGACGGCCATCCATCCTTCGCCTCCACTCTGTAATGCCTC
TTACCAAGACATTCCCTTGTCTGTGAGGTGAAAGTGAACGGGGATGCTTTTCTAGTTCTG
GAAGGAAAAAAAAAAATGTTTTGTTAATCTGTTGTGACAATGCACTTTTATGTATAGTAC
TGTACATTTTGGCATGTACCATTCCAGGCTTCAGTATACAGTCAGGTCTGTTCTTCACGG
TGTATCTTTATAATAAAGAAGATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCATTAGAACATTCATCCAAGTTCAGTGTGTAGTGTGATGGTTACTATAGATGTTTAA
AAGTATAGTAAGTGGCTGTGTAACAAGAGATACTGCTATTTACCTATGGACTTAAAGGTA
ACTCCTGCCCATGTAATCAAATCAGTATTGTCCTTTCCTGTCGGTTTGATCAGTTGCAGT
ACTGGTGGCTTCCTGCTTGTGACTGTTACCTAATCGTGTCAATGTACATCTGTAGTATGT
ACATGTGAAAGTGCCTTTCTATTTTAGAGGAGTTTTAGCCTTGCTCTCTACTGTTGCCCC
GCCCACCTCCACTCCCTGCCCCCATTTCTCCACCCACTTGAGTGTTTTGGAATTTCCTCT
GCTCTCTCCCAGCTTCTTCACCATCCCCATCTTTCTGTGCCTCAGTGCTCAGTATTGTCC
CGTCTTGCATCCTTGTCTGCCATCAGGCACGTCATTTTCCTCGTGTGTCCTTTTCCTCTT
AGCCATGACTGTGCCTTTCCCTCCCCAAAGTAACTCCAGGTCTCCCACACCTCACCACCC
CTCCCCTGCTCACGTGCTGCTGACGGCCATCCATCCTTCGCCTCCACTCTGTAATGCCTC
TTACCAAGACATTCCCTTGTCTGTGAGGTGAAAGTGAACGGGGATGCTTTTCTAGTTCTG
GAAGGAAAAAAAAAAATGTTTTGTTAATCTGTTGTGACAATGCACTTTTATGTATAGTAC
TGTACATTTTGGCATGTACCATTCCAGGCTTCAGTATACAGTCAGGTCTGTTCTTCACGG
TGTATCTTTATAATAAAGAAGATA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               701-804, gnl|bosTau2|chr15 (29516101-29516204)
               

               
               701-804, gnl|Hg17|chr12 (62827768-62827872)
               

               
               701-804, gnl|Mm7|chr10 (121271754-121271650)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               701-804, gnl|bosTau2|chr15 (29516101-29516204)
               

               
               701-804, gnl|Hg17|chr12 (62827768-62827872)
               

               
               701-804, gnl|Mm7|chr10 (121271754-121271650)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fce (0.271592)
               

               
               sin (0.174948)
               

               
               hyp (0.142837)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               sin (0.174948)
               

               
               hyp (0.142837)
               

               
               ecc (0.115035)

	701-804, gnl\|bosTau2\|chr15 (29516101-29516204)
	701-804, gnl\|Hg17\|chr12 (62827768-62827872)
	701-804, gnl\|Mm7\|chr10 (121271754-121271650)