Non-Coding RNA Search

Ss1.1-recc2810c_j9.5

Sequence:


               
               AATAAGTTGGGGTTTGCCTTGGATTACATCTAAAATGGATTATTTTCTAAAGTACTGAGA
TACAAATAAGGCAGTGTCACCCACATTGAAGAAAAGTCTTTATAGATCTAAAGAATAATT
AGGTTAAATCATTAAAATGCCCCTCTAGATGTAACTGATACTGTATTTCTTAACATTTTA
AAATCTAGAATTTCTAAAATAGAGTTTTAGTGCCAGCACAGTTTGAAAGAGGACATCCAT
TTTTTATCATAGAAGTTATAACGAAAATTCTAAAATGACACTTTCCCTCTGCTATAAATT
GTCAGTTAAAAGTGGTTTAAAGAAGCAGGTTATCTTTGCAGATTTTAAAGAAAGCTAGAA
AGTTCTAATGTTTTAACTTGGAGAAAAATACATCTCTAATTATTAGCATGCTTACCAAAC
CTGAGTGTCATTTTTAAGAAGAGTTGTAGCTCTTCTGATTATTGCAGTAGCTGTATAAGT
GTACAAAATCTGTGATGGATGTAGTCATTAGCAAAGAATTTAAATCACTTAAGTATTTTA
CCATGGTTCATTATTATTAAAGCACAAAGTAGCCTGTTGTTAGAAAATGTGTTTTTATAA
ATGAATGTAAAATAATTAAATGAATTGTGAAATGGATGTTTAAGAAAATAGGTTTAAAAA
GTAACTATATTCAGTGATGTCTTGAAACAACCATATCATGAAATACACTTTACTAGCTAT
GTTATTATAAGCTACACTGGCCCAGAATTTGAACACTAAACATCATTGGATTTAATAATT
TAGTGTATTTTGATAATAAAGGGTTTTGTTTCTTGAATATCTTTCACTTTTTAAAAAACT
TTTATTTGTGTGGCATTTATTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATAAGTTGGGGTTTGCCTTGGATTACATCTAAAATGGATTATTTTCTAAAGTACTGAGA
TACAAATAAGGCAGTGTCACCCACATTGAAGAAAAGTCTTTATAGATCTAAAGAATAATT
AGGTTAAATCATTAAAATGCCCCTCTAGATGTAACTGATACTGTATTTCTTAACATTTTA
AAATCTAGAATTTCTAAAATAGAGTTTTAGTGCCAGCACAGTTTGAAAGAGGACATCCAT
TTTTTATCATAGAAGTTATAACGAAAATTCTAAAATGACACTTTCCCTCTGCTATAAATT
GTCAGTTAAAAGTGGTTTAAAGAAGCAGGTTATCTTTGCAGATTTTAAAGAAAGCTAGAA
AGTTCTAATGTTTTAACTTGGAGAAAAATACATCTCTAATTATTAGCATGCTTACCAAAC
CTGAGTGTCATTTTTAAGAAGAGTTGTAGCTCTTCTGATTATTGCAGTAGCTGTATAAGT
GTACAAAATCTGTGATGGATGTAGTCATTAGCAAAGAATTTAAATCACTTAAGTATTTTA
CCATGGTTCATTATTATTAAAGCACAAAGTAGCCTGTTGTTAGAAAATGTGTTTTTATAA
ATGAATGTAAAATAATTAAATGAATTGTGAAATGGATGTTTAAGAAAATAGGTTTAAAAA
GTAACTATATTCAGTGATGTCTTGAAACAACCATATCATGAAATACACTTTACTAGCTAT
GTTATTATAAGCTACACTGGCCCAGAATTTGAACACTAAACATCATTGGATTTAATAATT
TAGTGTATTTTGATAATAAAGGGTTTTGTTTCTTGAATATCTTTCACTTTTTAAAAAACT
TTTATTTGTGTGGCATTTATTTTT

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               601-864, gnl|bosTau2|chr11 (29647746-29647995)
               

               
               601-864, gnl|Hg17|chr10 (59800196-59800470)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               601-864, gnl|bosTau2|chr11 (29647746-29647995)
               

               
               601-864, gnl|Hg17|chr10 (59800196-59800470)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               vin (0.332557)
               

               
               nms (0.213858)
               

               
               col (0.195008)
               

               
               bfe (0.149858)
               

               
               kid (0.129735)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               nms (0.213858)
               

               
               col (0.195008)
               

               
               bfe (0.149858)
               

               
               kid (0.129735)
               

               
               ecc (0.115035)

	601-864, gnl\|bosTau2\|chr11 (29647746-29647995)
	601-864, gnl\|Hg17\|chr10 (59800196-59800470)

	vin (0.332557)
	nms (0.213858)
	col (0.195008)
	bfe (0.149858)
	kid (0.129735)
	ecc (0.115035)