Non-Coding RNA Search

Ss1.1-recc2810c_l4.5

Sequence:


               
               TACTCACCCAAATTTCCAAATAATTGAATCAAAAGTTAACATATGCTTTCATCCCTTTAA
TAGGCAGAGTCCGTAATTGATGCAAAGTTTGCCACAGCCGAGAAATGACTTCCGATGTTT
GTCTGTCTCCTGCCCTGTACTTGGCCATCCCTGTCCCCTGATTAGGTCTTCCTTTTCCCT
TTCACACAGGGTCCTACAGAACGCGCTTCTGCTTTCCGACAGCAGCCTCCACCTCTTCTT
GCAGAGCCATCTGAATTCAGAAGACATTGAGGCCTGTGTTTCTGGGCAGACGAAGTACTC
TGTAGAAGAAGCCATTCACAAGTTTGCCTTGATGAACAGACGCTTCCCTCCACACTGAAT
TAATGAATGCGGTAGAAATTCAATTATCTGCATTCTGATTATGTGACTTTCATTTAGTCA
GACTTGAATTATTCGCGTTTAAATTATCTAGCTTAAAAAATATCCCACTGCACTCCCAAT
GGCTAATTAAAAGTCCAAATTTCCTGTCTCTCTTTGTGACTGGAGATAATTAAAGTTCTC
CTCTGTTACTCAGCCTTTGAGTGTGTTGTGAAAACCCATTTCCTCTTTTTATTATTTTCC
CCCTCTCTTCTTTTCCAGTTCATCCTCTGGGTTCGGACACAGTAGTGATGACAGCAGTTC
ACACGGATGTAAAATGATCACAGCTCCGCAGGAATCCTCTGGGCCTTCTTTATAGCTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACTCACCCAAATTTCCAAATAATTGAATCAAAAGTTAACATATGCTTTCATCCCTTTAA
TAGGCAGAGTCCGTAATTGATGCAAAGTTTGCCACAGCCGAGAAATGACTTCCGATGTTT
GTCTGTCTCCTGCCCTGTACTTGGCCATCCCTGTCCCCTGATTAGGTCTTCCTTTTCCCT
TTCACACAGGGTCCTACAGAACGCGCTTCTGCTTTCCGACAGCAGCCTCCACCTCTTCTT
GCAGAGCCATCTGAATTCAGAAGACATTGAGGCCTGTGTTTCTGGGCAGACGAAGTACTC
TGTAGAAGAAGCCATTCACAAGTTTGCCTTGATGAACAGACGCTTCCCTCCACACTGAAT
TAATGAATGCGGTAGAAATTCAATTATCTGCATTCTGATTATGTGACTTTCATTTAGTCA
GACTTGAATTATTCGCGTTTAAATTATCTAGCTTAAAAAATATCCCACTGCACTCCCAAT
GGCTAATTAAAAGTCCAAATTTCCTGTCTCTCTTTGTGACTGGAGATAATTAAAGTTCTC
CTCTGTTACTCAGCCTTTGAGTGTGTTGTGAAAACCCATTTCCTCTTTTTATTATTTTCC
CCCTCTCTTCTTTTCCAGTTCATCCTCTGGGTTCGGACACAGTAGTGATGACAGCAGTTC
ACACGGATGTAAAATGATCACAGCTCCGCAGGAATCCTCTGGGCCTTCTTTATAGCTCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61885829|ref|XP_585673.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61885829|ref|XP_585673.1|

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               347-465, + strand, RNAz p=0.871944
               

               
               347-465, - strand, RNAz p=0.871944
               

               
               347-477, + strand, RNAz p=0.989519
               

               
               347-477, - strand, RNAz p=0.989519

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               347-465, + strand, RNAz p=0.871944
               

               
               347-465, - strand, RNAz p=0.871944
               

               
               347-477, + strand, RNAz p=0.989519
               

               
               347-477, - strand, RNAz p=0.989519

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               347-698, gnl|bosTau2|chr4 (40472420-40472772)
               

               
               347-698, gnl|canFam2|chr14 (42597154-42597617)
               

               
               347-698, gnl|dasNov1|scaffold_373 (128782-128320)
               

               
               347-698, gnl|echTel1|scaffold_318005 (40048-40499)
               

               
               347-698, gnl|galGal2|chr2 (31433721-31434186)
               

               
               347-698, gnl|hg17|chr7 (26184981-26185444)
               

               
               347-698, gnl|Hg17|chr7 (26185079-26185430)
               

               
               347-698, gnl|loxAfr1|scaffold_8083 (60750-60290)
               

               
               347-698, gnl|mm7|chr6 (51551767-51552229)
               

               
               347-698, gnl|Mm7|chr6 (51551864-51552215)
               

               
               347-698, gnl|monDom2|scaffold_57 (1651967-1651501)
               

               
               347-698, gnl|oryCun1|scaffold_171019 (11208-10744)
               

               
               347-698, gnl|panTro1|chr6 (27312165-27312628)
               

               
               347-698, gnl|rheMac2|chr3 (99876839-99876376)
               

               
               347-698, gnl|rn3|chr4 (80128173-80128636)
               

               
               347-698, gnl|xenTro1|scaffold_29 (1465465-1465993)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               347-698, gnl|bosTau2|chr4 (40472420-40472772)
               

               
               347-698, gnl|canFam2|chr14 (42597154-42597617)
               

               
               347-698, gnl|dasNov1|scaffold_373 (128782-128320)
               

               
               347-698, gnl|echTel1|scaffold_318005 (40048-40499)
               

               
               347-698, gnl|galGal2|chr2 (31433721-31434186)
               

               
               347-698, gnl|hg17|chr7 (26184981-26185444)
               

               
               347-698, gnl|Hg17|chr7 (26185079-26185430)
               

               
               347-698, gnl|loxAfr1|scaffold_8083 (60750-60290)
               

               
               347-698, gnl|mm7|chr6 (51551767-51552229)
               

               
               347-698, gnl|Mm7|chr6 (51551864-51552215)
               

               
               347-698, gnl|monDom2|scaffold_57 (1651967-1651501)
               

               
               347-698, gnl|oryCun1|scaffold_171019 (11208-10744)
               

               
               347-698, gnl|panTro1|chr6 (27312165-27312628)
               

               
               347-698, gnl|rheMac2|chr3 (99876839-99876376)
               

               
               347-698, gnl|rn3|chr4 (80128173-80128636)
               

               
               347-698, gnl|xenTro1|scaffold_29 (1465465-1465993)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fce (0.271592)
               

               
               ecc (0.23007)
               

               
               cje (0.165235)
               

               
               pla (0.133672)
               

               
               spc (0.113366)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               ecc (0.23007)
               

               
               cje (0.165235)
               

               
               pla (0.133672)
               

               
               spc (0.113366)

	347-465, + strand, RNAz p=0.871944
	347-465, - strand, RNAz p=0.871944
	347-477, + strand, RNAz p=0.989519
	347-477, - strand, RNAz p=0.989519

	347-698, gnl\|bosTau2\|chr4 (40472420-40472772)
	347-698, gnl\|canFam2\|chr14 (42597154-42597617)
	347-698, gnl\|dasNov1\|scaffold_373 (128782-128320)
	347-698, gnl\|echTel1\|scaffold_318005 (40048-40499)
	347-698, gnl\|galGal2\|chr2 (31433721-31434186)
	347-698, gnl\|hg17\|chr7 (26184981-26185444)
	347-698, gnl\|Hg17\|chr7 (26185079-26185430)
	347-698, gnl\|loxAfr1\|scaffold_8083 (60750-60290)
	347-698, gnl\|mm7\|chr6 (51551767-51552229)
	347-698, gnl\|Mm7\|chr6 (51551864-51552215)
	347-698, gnl\|monDom2\|scaffold_57 (1651967-1651501)
	347-698, gnl\|oryCun1\|scaffold_171019 (11208-10744)
	347-698, gnl\|panTro1\|chr6 (27312165-27312628)
	347-698, gnl\|rheMac2\|chr3 (99876839-99876376)
	347-698, gnl\|rn3\|chr4 (80128173-80128636)
	347-698, gnl\|xenTro1\|scaffold_29 (1465465-1465993)

	fce (0.271592)
	ecc (0.23007)
	cje (0.165235)
	pla (0.133672)
	spc (0.113366)