Non-Coding RNA Search

Ss1.1-recc2810c_m16.5

Sequence:


               
               CACTTGAAGCCACCGGGAGCCTGCGGCCCGGCCAGCCCGGGATTTCTCCGGAGCAGAGCT
GCACCGCCGGGCCCTGGAAGCCAGGACTTCTCCATGTATTTGTGCATCCCCAGCCGGGGT
GGGCGGGCCGCCAGAGCAGCTTTTTACAATCCAGAGACAGAAAACAAAATCTAGAAGCAA
CATCGAAACAAAGAACCCGTTTCCTTCCCGGCACCCGTTTCTGTCGCCTCCTTCCCTGCT
TTGCCTCTCCCTGGCATCAGTCAGCCCTCCTGGGGCGTGTACCTCACTGCCTGCCCCAGG
ACTTGGGGCCTGTCTCCCCCTCCCCTCCCCACTGGCCCGGGGGAGGCACCCGCACACCCA
AAGATGCTTTTGCCAAGATGGCTGTGCTGTCCCTTTGAGTTCCTGCTTCTTTGTATACTG
CTTCTGGGACTCTCGGCCTGGGAAGGGGTTAATTTCCCACCTAGAGAGGTTGACAGGGAA
AGGAAAATGACAGCGGGGTTTGATGGTGGTGGGTGTTAACTGAGAAGGGAGGGCTGGCAG
TGGGGAGGTGATCTCTACCCTACACACTCCTGCATGGGAGGCAAAGCCAGTACCAGGGTC
AGGCTAGAGTCAAGACACCTATGTTCTGAGGGCTCAACCCCAAACCTGCAGATGTCATAA
GCTCCAGGCTTGGGATGTCACCTGAGTACCTCTCCCAGCCCCCTCCTCTTCAGTCTGTCA
CCATGGCCTTCCCAGCAACCGTCCTAACTCTTTGGGGAACAGCATAGTCCCATTGCCATA
CTAGCCCAGCCTTGTCATTGTCATTTCCCCAGTGGTGGTGGTCCTCCACCTCTGCTCTGA
TCCCTCATCTCTTTTGCCCCTCTTTTCTCACAAGTGCCATGAGTTTTCAAACATCTTCGG
GTCTTAGCCTGCTGCTGCCATGAACTTCTTTGGGTTAAGGAGGAGGGATTCTAGGGAGGA
ACTAGGAGGAGGGGACAGATAGGTGGCTGGAGGGACCCTTTTTGCTGCTAGAAAGCCCCT
CCCTTCTCCTGGGGAGCTGGGGCTTGCTTGTCCCCATCAGTTAGGGGAGAAGGGGTCAAA
CCAAAGACGGTGGTTTGTCCCACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTTGAAGCCACCGGGAGCCTGCGGCCCGGCCAGCCCGGGATTTCTCCGGAGCAGAGCT
GCACCGCCGGGCCCTGGAAGCCAGGACTTCTCCATGTATTTGTGCATCCCCAGCCGGGGT
GGGCGGGCCGCCAGAGCAGCTTTTTACAATCCAGAGACAGAAAACAAAATCTAGAAGCAA
CATCGAAACAAAGAACCCGTTTCCTTCCCGGCACCCGTTTCTGTCGCCTCCTTCCCTGCT
TTGCCTCTCCCTGGCATCAGTCAGCCCTCCTGGGGCGTGTACCTCACTGCCTGCCCCAGG
ACTTGGGGCCTGTCTCCCCCTCCCCTCCCCACTGGCCCGGGGGAGGCACCCGCACACCCA
AAGATGCTTTTGCCAAGATGGCTGTGCTGTCCCTTTGAGTTCCTGCTTCTTTGTATACTG
CTTCTGGGACTCTCGGCCTGGGAAGGGGTTAATTTCCCACCTAGAGAGGTTGACAGGGAA
AGGAAAATGACAGCGGGGTTTGATGGTGGTGGGTGTTAACTGAGAAGGGAGGGCTGGCAG
TGGGGAGGTGATCTCTACCCTACACACTCCTGCATGGGAGGCAAAGCCAGTACCAGGGTC
AGGCTAGAGTCAAGACACCTATGTTCTGAGGGCTCAACCCCAAACCTGCAGATGTCATAA
GCTCCAGGCTTGGGATGTCACCTGAGTACCTCTCCCAGCCCCCTCCTCTTCAGTCTGTCA
CCATGGCCTTCCCAGCAACCGTCCTAACTCTTTGGGGAACAGCATAGTCCCATTGCCATA
CTAGCCCAGCCTTGTCATTGTCATTTCCCCAGTGGTGGTGGTCCTCCACCTCTGCTCTGA
TCCCTCATCTCTTTTGCCCCTCTTTTCTCACAAGTGCCATGAGTTTTCAAACATCTTCGG
GTCTTAGCCTGCTGCTGCCATGAACTTCTTTGGGTTAAGGAGGAGGGATTCTAGGGAGGA
ACTAGGAGGAGGGGACAGATAGGTGGCTGGAGGGACCCTTTTTGCTGCTAGAAAGCCCCT
CCCTTCTCCTGGGGAGCTGGGGCTTGCTTGTCCCCATCAGTTAGGGGAGAAGGGGTCAAA
CCAAAGACGGTGGTTTGTCCCACA

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               39-154, - strand, RNAz p=0.525311
               

               
               267-382, - strand, RNAz p=0.988921
               

               
               745-861, - strand, RNAz p=0.972757
               

               
               942-1102, + strand, RNAz p=0.991246

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-154, - strand, RNAz p=0.525311
               

               
               267-382, - strand, RNAz p=0.988921
               

               
               745-861, - strand, RNAz p=0.972757
               

               
               942-1102, + strand, RNAz p=0.991246

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               267-382, BP450234 full-length enriched swine cDNA library, adult liver Sus 
(dbj|BP450234.1|), blast E-value=0, identity=100% 
               

               
               270-370, DB173691 TKIDN2 Homo sapiens cDNA clone TKIDN2009354 5', mRNA 
(dbj|DB173691.1|), blast E-value=1e-19, identity=88.35% 
               

               
               270-370, DB174595 TKIDN2 Homo sapiens cDNA clone TKIDN2010534 5', mRNA 
(dbj|DB174595.1|), blast E-value=1e-19, identity=88.35% 
               

               
               267-382, DB786041 full-length enriched swine cDNA library, adult adrenal 
(dbj|DB786041.1|), blast E-value=0, identity=100% 
               

               
               267-382, LIB30320_013_H12_SP6_1 LIB30320 Canis familiaris cDNA clone 
(gb|DN267545.1|), blast E-value=9.99967e-42, identity=95.73% 
               

               
               267-382, LIB30320_012_H12_SP6_1 LIB30320 Canis familiaris cDNA clone 
(gb|DN268312.1|), blast E-value=9.99967e-42, identity=95.73%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               267-382, BP450234 full-length enriched swine cDNA library, adult liver Sus 
(dbj|BP450234.1|), blast E-value=0, identity=100% 
               

               
               270-370, DB173691 TKIDN2 Homo sapiens cDNA clone TKIDN2009354 5', mRNA 
(dbj|DB173691.1|), blast E-value=1e-19, identity=88.35% 
               

               
               270-370, DB174595 TKIDN2 Homo sapiens cDNA clone TKIDN2010534 5', mRNA 
(dbj|DB174595.1|), blast E-value=1e-19, identity=88.35% 
               

               
               267-382, DB786041 full-length enriched swine cDNA library, adult adrenal 
(dbj|DB786041.1|), blast E-value=0, identity=100% 
               

               
               267-382, LIB30320_013_H12_SP6_1 LIB30320 Canis familiaris cDNA clone 
(gb|DN267545.1|), blast E-value=9.99967e-42, identity=95.73% 
               

               
               267-382, LIB30320_012_H12_SP6_1 LIB30320 Canis familiaris cDNA clone 
(gb|DN268312.1|), blast E-value=9.99967e-42, identity=95.73%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_014921, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_014921, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-554, gnl|bosTau2|chr7 (7651504-7652059)
               

               
               1-554, gnl|Hg17|chr19 (14121714-14121168)
               

               
               1-554, gnl|Mm7|chr8 (82518618-82519128)
               


               
               670-1102, gnl|bosTau2|chr7 (7652157-7652583)
               

               
               670-1102, gnl|Hg17|chr19 (14121018-14120586)
               

               
               670-1102, gnl|Mm7|chr8 (82519199-82519571)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-554, gnl|bosTau2|chr7 (7651504-7652059)
               

               
               1-554, gnl|Hg17|chr19 (14121714-14121168)
               

               
               1-554, gnl|Mm7|chr8 (82518618-82519128)
               


               
               670-1102, gnl|bosTau2|chr7 (7652157-7652583)
               

               
               670-1102, gnl|Hg17|chr19 (14121018-14120586)
               

               
               670-1102, gnl|Mm7|chr8 (82519199-82519571)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fhi (0.169578)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               ecc (0.115035)

	39-154, - strand, RNAz p=0.525311
	267-382, - strand, RNAz p=0.988921
	745-861, - strand, RNAz p=0.972757
	942-1102, + strand, RNAz p=0.991246

	267-382, BP450234 full-length enriched swine cDNA library, adult liver Sus (dbj\|BP450234.1\|), blast E-value=0, identity=100%
	270-370, DB173691 TKIDN2 Homo sapiens cDNA clone TKIDN2009354 5', mRNA (dbj\|DB173691.1\|), blast E-value=1e-19, identity=88.35%
	270-370, DB174595 TKIDN2 Homo sapiens cDNA clone TKIDN2010534 5', mRNA (dbj\|DB174595.1\|), blast E-value=1e-19, identity=88.35%
	267-382, DB786041 full-length enriched swine cDNA library, adult adrenal (dbj\|DB786041.1\|), blast E-value=0, identity=100%
	267-382, LIB30320_013_H12_SP6_1 LIB30320 Canis familiaris cDNA clone (gb\|DN267545.1\|), blast E-value=9.99967e-42, identity=95.73%
	267-382, LIB30320_012_H12_SP6_1 LIB30320 Canis familiaris cDNA clone (gb\|DN268312.1\|), blast E-value=9.99967e-42, identity=95.73%

	1-554, gnl\|bosTau2\|chr7 (7651504-7652059)
	1-554, gnl\|Hg17\|chr19 (14121714-14121168)
	1-554, gnl\|Mm7\|chr8 (82518618-82519128)

	670-1102, gnl\|bosTau2\|chr7 (7652157-7652583)
	670-1102, gnl\|Hg17\|chr19 (14121018-14120586)
	670-1102, gnl\|Mm7\|chr8 (82519199-82519571)