Non-Coding RNA Search

Ss1.1-recc2810c_n24.5

Sequence:


               
               GCGGACGCGTGGGCGACCCACGCGTCCGANGGAATCCGAGGTCCANTTAAAAAAATGAGG
CAGAAGGGAGTGTTAACCAAGACCTTCCGAGGCCCAGCCAGTGTCTGTAGAACTCCGACC
AGCCACGTTTACATGTTTGAGAATGGCAGTGGGGACTCGGGGGACTCCTCTGAGGAAGAG
TCCCACCGGGTGGCTCTGCGGCCTCGGGGCAAGGAGCGCCAGAAGAAGGGTGCCCACCAG
TCTCACCAGCCTGGAGCAGGGGATGTGGTGCTGCTACAGCGGGAGCTGTCCCGGACGTGA
GGTGCCCGGCTCTGAGGGAGGGAATCCGAGGTCCAGGTCGCAGATATCAAGAAAGTCAAC
AACTTCATCAGAGAACAAGACTTATATGCTTTGAAATCTATTAAGATTCCAGTAAAAAAC
CACGGGATCCTAACAGAGACCTGCAAAGAACTCAGACCCCTCCTGAGCTCATCCACGGAG
ACCAGAGTGACCTTCGAGGAGCAGCCAGACCCTGACAGAGTCGCTGTTGGTGCCAATGCC
CCATCTAGCCCACTGACGGAGTTCTTTAAGGGCATCGACCAGAATATTGAGCATGCCGTG
CAGTCAGAAATCTTTTTGAGTGAAAGTTACTGCTTAGGGACCTCCAGTCAGCCCCTGCTT
CCAGCTCCTCCAAAGACATCGACAAGTGGTGCAGACTGTGGAATTCAGTGGTGGAATGCT
GTTTTTATCATGCTTCTAATGGGAATGGTTTTACCAGTGTTTTATTGGGTCTATTTTAAA
ATACAAGCTACTAGTGAGATCCCTAGTAGCTTGAATACAACTGCTGTCCCCAAGGGCTCA
ATGATAATGAGTGCAGTTCCAGAGCAAGCCCCCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGACGCGTGGGCGACCCACGCGTCCGANGGAATCCGAGGTCCANTTAAAAAAATGAGG
CAGAAGGGAGTGTTAACCAAGACCTTCCGAGGCCCAGCCAGTGTCTGTAGAACTCCGACC
AGCCACGTTTACATGTTTGAGAATGGCAGTGGGGACTCGGGGGACTCCTCTGAGGAAGAG
TCCCACCGGGTGGCTCTGCGGCCTCGGGGCAAGGAGCGCCAGAAGAAGGGTGCCCACCAG
TCTCACCAGCCTGGAGCAGGGGATGTGGTGCTGCTACAGCGGGAGCTGTCCCGGACGTGA
GGTGCCCGGCTCTGAGGGAGGGAATCCGAGGTCCAGGTCGCAGATATCAAGAAAGTCAAC
AACTTCATCAGAGAACAAGACTTATATGCTTTGAAATCTATTAAGATTCCAGTAAAAAAC
CACGGGATCCTAACAGAGACCTGCAAAGAACTCAGACCCCTCCTGAGCTCATCCACGGAG
ACCAGAGTGACCTTCGAGGAGCAGCCAGACCCTGACAGAGTCGCTGTTGGTGCCAATGCC
CCATCTAGCCCACTGACGGAGTTCTTTAAGGGCATCGACCAGAATATTGAGCATGCCGTG
CAGTCAGAAATCTTTTTGAGTGAAAGTTACTGCTTAGGGACCTCCAGTCAGCCCCTGCTT
CCAGCTCCTCCAAAGACATCGACAAGTGGTGCAGACTGTGGAATTCAGTGGTGGAATGCT
GTTTTTATCATGCTTCTAATGGGAATGGTTTTACCAGTGTTTTATTGGGTCTATTTTAAA
ATACAAGCTACTAGTGAGATCCCTAGTAGCTTGAATACAACTGCTGTCCCCAAGGGCTCA
ATGATAATGAGTGCAGTTCCAGAGCAAGCCCCCAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61863452|ref|XP_608233.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61863452|ref|XP_608233.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               121-240, - strand, RNAz p=0.880389
               

               
               163-275, - strand, RNAz p=0.664656

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-240, - strand, RNAz p=0.880389
               

               
               163-275, - strand, RNAz p=0.664656

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC084545, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC084545, -

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               44-292, gnl|bosTau2|chr21 (4744357-4744109)
               

               
               44-292, gnl|canFam2|chr3 (43842166-43841945)
               

               
               44-292, gnl|danRer3|chrUn (54578029-54578232)
               

               
               44-292, gnl|dasNov1|scaffold_20885 (38147-37939)
               

               
               44-292, gnl|echTel1|scaffold_310139 (44776-44567)
               

               
               44-292, gnl|fr1|chrUn (328883865-328884071)
               

               
               44-292, gnl|galGal2|chr10 (17852940-17852731)
               

               
               44-292, gnl|hg17|chr15 (98089441-98089659)
               

               
               44-292, gnl|Hg17|chr15 (98089738-98089490)
               

               
               44-292, gnl|mm7|chr7 (63083104-63082896)
               

               
               44-292, gnl|Mm7|chr7 (63082813-63083054)
               

               
               44-292, gnl|monDom2|scaffold_12 (61015049-61014846)
               

               
               44-292, gnl|panTro1|chr16 (99160292-99160510)
               

               
               44-292, gnl|rheMac2|chr7 (79771441-79771659)
               

               
               44-292, gnl|tetNig1|chr13 (2613545-2613733)
               

               
               44-292, gnl|xenTro1|scaffold_208 (1493994-1493785)
               


               
               335-874, gnl|bosTau2|chr21 (4741328-4740789)
               

               
               335-874, gnl|Hg17|chr15 (98087461-98086925)
               

               
               335-874, gnl|Mm7|chr7 (63087279-63087815)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               44-292, gnl|bosTau2|chr21 (4744357-4744109)
               

               
               44-292, gnl|canFam2|chr3 (43842166-43841945)
               

               
               44-292, gnl|danRer3|chrUn (54578029-54578232)
               

               
               44-292, gnl|dasNov1|scaffold_20885 (38147-37939)
               

               
               44-292, gnl|echTel1|scaffold_310139 (44776-44567)
               

               
               44-292, gnl|fr1|chrUn (328883865-328884071)
               

               
               44-292, gnl|galGal2|chr10 (17852940-17852731)
               

               
               44-292, gnl|hg17|chr15 (98089441-98089659)
               

               
               44-292, gnl|Hg17|chr15 (98089738-98089490)
               

               
               44-292, gnl|mm7|chr7 (63083104-63082896)
               

               
               44-292, gnl|Mm7|chr7 (63082813-63083054)
               

               
               44-292, gnl|monDom2|scaffold_12 (61015049-61014846)
               

               
               44-292, gnl|panTro1|chr16 (99160292-99160510)
               

               
               44-292, gnl|rheMac2|chr7 (79771441-79771659)
               

               
               44-292, gnl|tetNig1|chr13 (2613545-2613733)
               

               
               44-292, gnl|xenTro1|scaffold_208 (1493994-1493785)
               


               
               335-874, gnl|bosTau2|chr21 (4741328-4740789)
               

               
               335-874, gnl|Hg17|chr15 (98087461-98086925)
               

               
               335-874, gnl|Mm7|chr7 (63087279-63087815)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)
               

               
               cty (0.10408)

	121-240, - strand, RNAz p=0.880389
	163-275, - strand, RNAz p=0.664656

	44-292, gnl\|bosTau2\|chr21 (4744357-4744109)
	44-292, gnl\|canFam2\|chr3 (43842166-43841945)
	44-292, gnl\|danRer3\|chrUn (54578029-54578232)
	44-292, gnl\|dasNov1\|scaffold_20885 (38147-37939)
	44-292, gnl\|echTel1\|scaffold_310139 (44776-44567)
	44-292, gnl\|fr1\|chrUn (328883865-328884071)
	44-292, gnl\|galGal2\|chr10 (17852940-17852731)
	44-292, gnl\|hg17\|chr15 (98089441-98089659)
	44-292, gnl\|Hg17\|chr15 (98089738-98089490)
	44-292, gnl\|mm7\|chr7 (63083104-63082896)
	44-292, gnl\|Mm7\|chr7 (63082813-63083054)
	44-292, gnl\|monDom2\|scaffold_12 (61015049-61014846)
	44-292, gnl\|panTro1\|chr16 (99160292-99160510)
	44-292, gnl\|rheMac2\|chr7 (79771441-79771659)
	44-292, gnl\|tetNig1\|chr13 (2613545-2613733)
	44-292, gnl\|xenTro1\|scaffold_208 (1493994-1493785)

	335-874, gnl\|bosTau2\|chr21 (4741328-4740789)
	335-874, gnl\|Hg17\|chr15 (98087461-98086925)
	335-874, gnl\|Mm7\|chr7 (63087279-63087815)