Ss1.1-recc2811c_g14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCCGCAGCTGCAGCCATGTTAAACCCTGGGCAACAACAGCCATATTTCCCATCACCG GCACCGGGTCAGGCTCCTGGACCAGCTGCAGCAGCCCCAGCTCAGGTACAGGCTGCCGCA GCTGCCACAGTTAAGGCGCACCATCATCAGCACTCGCATCATCCACAACAGCAGCTGGAT ATTGAGCCGGATAGACCTATTGGATATGGAGCCTTTGGTGTCGTCTGGTCAGTAACAGAT CCAAGAGATGGAAAGAGAGTAGCACTCAAAAAGATGCCCAACGTCTTCCAGAATCTGGTC TCTTGCAAAAGGGTCTTCCGGGAATTGAAGATGTTGTGTTTTTTTAAACATGATAATGTA CTCTCTGCCCTTGACATACTCCAACCTCCACACATTGACTATTTTGAAGAGATATATGTT GTCACAGAATTGATGCAGAGTGACCTACATAAAATTATCGTCTCTCCTCAACCACTCAGC TCAGATCATGTCAAAGTTTTTCTTTATCAGATTTTGCGAGGTTTGAAATATCTCCATTCA GCTGGCATTTTACATCGAGACATTAAGCCAGGGAATCTCCTTGTGAACAGCAACTGTGTT CTAAAGATTTGTGATTTTGGATTGGCCAGAGTGGAAGAATTAGATGAATCCCGTCATATG ACTCAGGAAGTTGTTACTCAGTATTATCGGGCTCCGGAAATCCTGATGGGCAGCCGTCAT TACAGCAATGCTATTGACATCTGGTCTGTCGGGTGTATCTTTGCAGAACTACTAGGACGA AGAATACTGTTTCAGGCACAGAGTCCCATTCAGCAGTTGGATTTGATCACAGATCTCTTG GGCACACCATCGCTGGAAGCAATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCCGCAGCTGCAGCCATGTTAAACCCTGGGCAACAACAGCCATATTTCCCATCACCG GCACCGGGTCAGGCTCCTGGACCAGCTGCAGCAGCCCCAGCTCAGGTACAGGCTGCCGCA GCTGCCACAGTTAAGGCGCACCATCATCAGCACTCGCATCATCCACAACAGCAGCTGGAT ATTGAGCCGGATAGACCTATTGGATATGGAGCCTTTGGTGTCGTCTGGTCAGTAACAGAT CCAAGAGATGGAAAGAGAGTAGCACTCAAAAAGATGCCCAACGTCTTCCAGAATCTGGTC TCTTGCAAAAGGGTCTTCCGGGAATTGAAGATGTTGTGTTTTTTTAAACATGATAATGTA CTCTCTGCCCTTGACATACTCCAACCTCCACACATTGACTATTTTGAAGAGATATATGTT GTCACAGAATTGATGCAGAGTGACCTACATAAAATTATCGTCTCTCCTCAACCACTCAGC TCAGATCATGTCAAAGTTTTTCTTTATCAGATTTTGCGAGGTTTGAAATATCTCCATTCA GCTGGCATTTTACATCGAGACATTAAGCCAGGGAATCTCCTTGTGAACAGCAACTGTGTT CTAAAGATTTGTGATTTTGGATTGGCCAGAGTGGAAGAATTAGATGAATCCCGTCATATG ACTCAGGAAGTTGTTACTCAGTATTATCGGGCTCCGGAAATCCTGATGGGCAGCCGTCAT TACAGCAATGCTATTGACATCTGGTCTGTCGGGTGTATCTTTGCAGAACTACTAGGACGA AGAATACTGTTTCAGGCACAGAGTCCCATTCAGCAGTTGGATTTGATCACAGATCTCTTG GGCACACCATCGCTGGAAGCAATG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-199, - strand, RNAz p=0.90757 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-199, - strand, RNAz p=0.90757 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-234, gnl|bosTau2|chr19 (13079718-13079951) | |
| 1-234, gnl|Hg17|chr17 (23394258-23394491) | |
| 1-234, gnl|Mm7|chr11 (78777610-78777377) | |
| 414-522, gnl|bosTau2|chr19 (13178934-13179042) | |
| 414-522, gnl|canFam2|chr9 (45852555-45852697) | |
| 414-522, gnl|danRer3|chr15 (37362682-37362818) | |
| 414-522, gnl|dasNov1|scaffold_15954 (2282-2424) | |
| 414-522, gnl|echTel1|scaffold_311281 (81522-81388) | |
| 414-522, gnl|fr1|chrUn (298157355-298157220) | |
| 414-522, gnl|galGal2|chr19 (8824462-8824604) | |
| 414-522, gnl|hg17|chr17 (23512284-23512426) | |
| 414-522, gnl|Hg17|chr17 (23512313-23512421) | |
| 414-522, gnl|loxAfr1|scaffold_24120 (15424-15282) | |
| 414-522, gnl|mm7|chr11 (78672596-78672453) | |
| 414-522, gnl|Mm7|chr11 (78672564-78672456) | |
| 414-522, gnl|monDom2|scaffold_44 (14072991-14073133) | |
| 414-522, gnl|oryCun1|scaffold_195608 (3808-3951) | |
| 414-522, gnl|panTro1|chr19 (26839436-26839578) | |
| 414-522, gnl|rheMac2|chr16 (23333933-23334075) | |
| 414-522, gnl|rn3|chr10 (64717796-64717653) | |
| 414-522, gnl|tetNig1|chrUn_random (100497716-100497846) | |
| 414-522, gnl|xenTro1|scaffold_456 (1049203-1049355) | |
| 605-824, gnl|bosTau2|chr19 (13185084-13185304) | |
| 605-824, gnl|canFam2|chr9 (45858209-45858462) | |
| 605-824, gnl|danRer3|chr15 (37375133-37375382) | |
| 605-824, gnl|dasNov1|scaffold_15954 (5247-5500) | |
| 605-824, gnl|echTel1|scaffold_311300 (49082-48829) | |
| 605-824, gnl|fr1|chrUn (298157011-298156782) | |
| 605-824, gnl|galGal2|chr19 (8826313-8826540) | |
| 605-824, gnl|hg17|chr17 (23519562-23519815) | |
| 605-824, gnl|Hg17|chr17 (23519599-23519819) | |
| 605-824, gnl|loxAfr1|scaffold_24120 (9111-8858) | |
| 605-824, gnl|mm7|chr11 (78668694-78668441) | |
| 605-824, gnl|Mm7|chr11 (78668655-78668435) | |
| 605-824, gnl|monDom2|scaffold_44 (14083226-14083451) | |
| 605-824, gnl|oryCun1|scaffold_155585 (14187-13934) | |
| 605-824, gnl|panTro1|chr19 (26846669-26846924) | |
| 605-824, gnl|rheMac2|chr16 (23341185-23341438) | |
| 605-824, gnl|rn3|chr10 (64712882-64712629) | |
| 605-824, gnl|tetNig1|chrUn_random (100498257-100498471) | |
| 605-824, gnl|xenTro1|scaffold_456 (1059899-1060124) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-234, gnl|bosTau2|chr19 (13079718-13079951) | |
| 1-234, gnl|Hg17|chr17 (23394258-23394491) | |
| 1-234, gnl|Mm7|chr11 (78777610-78777377) | |
| 414-522, gnl|bosTau2|chr19 (13178934-13179042) | |
| 414-522, gnl|canFam2|chr9 (45852555-45852697) | |
| 414-522, gnl|danRer3|chr15 (37362682-37362818) | |
| 414-522, gnl|dasNov1|scaffold_15954 (2282-2424) | |
| 414-522, gnl|echTel1|scaffold_311281 (81522-81388) | |
| 414-522, gnl|fr1|chrUn (298157355-298157220) | |
| 414-522, gnl|galGal2|chr19 (8824462-8824604) | |
| 414-522, gnl|hg17|chr17 (23512284-23512426) | |
| 414-522, gnl|Hg17|chr17 (23512313-23512421) | |
| 414-522, gnl|loxAfr1|scaffold_24120 (15424-15282) | |
| 414-522, gnl|mm7|chr11 (78672596-78672453) | |
| 414-522, gnl|Mm7|chr11 (78672564-78672456) | |
| 414-522, gnl|monDom2|scaffold_44 (14072991-14073133) | |
| 414-522, gnl|oryCun1|scaffold_195608 (3808-3951) | |
| 414-522, gnl|panTro1|chr19 (26839436-26839578) | |
| 414-522, gnl|rheMac2|chr16 (23333933-23334075) | |
| 414-522, gnl|rn3|chr10 (64717796-64717653) | |
| 414-522, gnl|tetNig1|chrUn_random (100497716-100497846) | |
| 414-522, gnl|xenTro1|scaffold_456 (1049203-1049355) | |
| 605-824, gnl|bosTau2|chr19 (13185084-13185304) | |
| 605-824, gnl|canFam2|chr9 (45858209-45858462) | |
| 605-824, gnl|danRer3|chr15 (37375133-37375382) | |
| 605-824, gnl|dasNov1|scaffold_15954 (5247-5500) | |
| 605-824, gnl|echTel1|scaffold_311300 (49082-48829) | |
| 605-824, gnl|fr1|chrUn (298157011-298156782) | |
| 605-824, gnl|galGal2|chr19 (8826313-8826540) | |
| 605-824, gnl|hg17|chr17 (23519562-23519815) | |
| 605-824, gnl|Hg17|chr17 (23519599-23519819) | |
| 605-824, gnl|loxAfr1|scaffold_24120 (9111-8858) | |
| 605-824, gnl|mm7|chr11 (78668694-78668441) | |
| 605-824, gnl|Mm7|chr11 (78668655-78668435) | |
| 605-824, gnl|monDom2|scaffold_44 (14083226-14083451) | |
| 605-824, gnl|oryCun1|scaffold_155585 (14187-13934) | |
| 605-824, gnl|panTro1|chr19 (26846669-26846924) | |
| 605-824, gnl|rheMac2|chr16 (23341185-23341438) | |
| 605-824, gnl|rn3|chr10 (64712882-64712629) | |
| 605-824, gnl|tetNig1|chrUn_random (100498257-100498471) | |
| 605-824, gnl|xenTro1|scaffold_456 (1059899-1060124) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (0.172801) | |
| ecc (0.115035) |