Ss1.1-recc2812c_g12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGACTGGGACCCCAACACACATGCTGCCTACACAGACAGCCCCTACTCTTACACTGCTT CTGCTGCTGAAGGCTTCCTGCCTCCTGACTTCTACCCACACTCGGACCCAGGGCGACCGT GTCCATTTCCCCTGGGGATGGAGGACCCCCTGGATACCCGGCTCTATGTAGAACCTTCCC TGCCACAGACAGGATCCTGGAGAGGTCTGCAACTCCCCTCAGGACCCCCACAGTTGCCCC CTGTGGTCACCGGACCATCCCTGGACACTGCCCGTGCTCAAATGCTGGCTTTGGGGCCAC AACAGCTGCTAGCCCAGGATGAGGAGGGAGACACGCTCCTGCACCTGCTTGCGGCTCGAG GGTTGCGCTGGGCCGCGTATGCTGCAGCTGAGGTGCTGCAAATGTACAGACATCTGGACA TTCGTGAGCATAAGGGCAAGACTCCGCTCCTGGTGGCTGCTTCTGCCAACCAGCCCCTGA TTGTGGAGGATCTACTGAACCTGGGAGCAGAACCCAATGCCACGGACCATCAAGGACGTT CCGTCTTACATGTGGCCGCTACCTATGGGCTCCCAAGAGTCCTCTCGGCTGTGATTAAAT CAGGGGTTCGGGTTGACCTGGAAGCCAGAGACTTCGAGGGCCTCACCCCCCTCCACACAG CCATCCTGGCCCTCAACGTCGCTATGCACCCACCCGACCTGTGTCCCGCTGTCCTGAGCA CCCAGGCCCAAGACAGGCTGGCTTGCGTCCAGATGTTGCTGCACATGGGTGCTGACCACA CCAGCCAGGAGATCAAGAGCAACAAGACAGTTCTGCACTTGGCTGTGCAGGCCGCCAACC CTACTCTGGTTCAGCTCTTGCTGGAGCTGCCTCGAGGGGACCTGCGGGCCTTTGTCAACA TGAAGGCCCATGGGAACACAGCCCTCCACATGGCGGCCGCCCTGCCCCCTGGGCCAGCCC AAGAGACGATCGTGCGACGCCTGCTGGCAGCGGGGGCGGATCCGACACTGCGCAATCTGG AGAACGAGCAGCCTGTCCACCTGCTCCGGCCCGGGCCGGGCCCCGAGGGGCTGCGGCAGC TATTGAAGAGGAGCCGTGTGGCACCCCCAGGCCTGTCCTCTTAGGACTCAAACCCAGAAC CTGGACTGATTTTCCAGTCCCCAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGACTGGGACCCCAACACACATGCTGCCTACACAGACAGCCCCTACTCTTACACTGCTT CTGCTGCTGAAGGCTTCCTGCCTCCTGACTTCTACCCACACTCGGACCCAGGGCGACCGT GTCCATTTCCCCTGGGGATGGAGGACCCCCTGGATACCCGGCTCTATGTAGAACCTTCCC TGCCACAGACAGGATCCTGGAGAGGTCTGCAACTCCCCTCAGGACCCCCACAGTTGCCCC CTGTGGTCACCGGACCATCCCTGGACACTGCCCGTGCTCAAATGCTGGCTTTGGGGCCAC AACAGCTGCTAGCCCAGGATGAGGAGGGAGACACGCTCCTGCACCTGCTTGCGGCTCGAG GGTTGCGCTGGGCCGCGTATGCTGCAGCTGAGGTGCTGCAAATGTACAGACATCTGGACA TTCGTGAGCATAAGGGCAAGACTCCGCTCCTGGTGGCTGCTTCTGCCAACCAGCCCCTGA TTGTGGAGGATCTACTGAACCTGGGAGCAGAACCCAATGCCACGGACCATCAAGGACGTT CCGTCTTACATGTGGCCGCTACCTATGGGCTCCCAAGAGTCCTCTCGGCTGTGATTAAAT CAGGGGTTCGGGTTGACCTGGAAGCCAGAGACTTCGAGGGCCTCACCCCCCTCCACACAG CCATCCTGGCCCTCAACGTCGCTATGCACCCACCCGACCTGTGTCCCGCTGTCCTGAGCA CCCAGGCCCAAGACAGGCTGGCTTGCGTCCAGATGTTGCTGCACATGGGTGCTGACCACA CCAGCCAGGAGATCAAGAGCAACAAGACAGTTCTGCACTTGGCTGTGCAGGCCGCCAACC CTACTCTGGTTCAGCTCTTGCTGGAGCTGCCTCGAGGGGACCTGCGGGCCTTTGTCAACA TGAAGGCCCATGGGAACACAGCCCTCCACATGGCGGCCGCCCTGCCCCCTGGGCCAGCCC AAGAGACGATCGTGCGACGCCTGCTGGCAGCGGGGGCGGATCCGACACTGCGCAATCTGG AGAACGAGCAGCCTGTCCACCTGCTCCGGCCCGGGCCGGGCCCCGAGGGGCTGCGGCAGC TATTGAAGAGGAGCCGTGTGGCACCCCCAGGCCTGTCCTCTTAGGACTCAAACCCAGAAC CTGGACTGATTTTCCAGTCCCCAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 142-260, - strand, RNAz p=0.513067 | |
| 904-1022, - strand, RNAz p=0.590522 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 142-260, - strand, RNAz p=0.513067 | |
| 904-1022, - strand, RNAz p=0.590522 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 142-335, gnl|bosTau2|chr18 (41705162-41704969) | |
| 142-335, gnl|Hg17|chr19 (41079847-41079654) | |
| 142-335, gnl|Mm7|chr7 (27368432-27368622) | |
| 439-588, gnl|bosTau2|chr18 (41704666-41704517) | |
| 439-588, gnl|canFam2|chr1 (119675741-119675592) | |
| 439-588, gnl|danRer3|chr17 (30566871-30566996) | |
| 439-588, gnl|dasNov1|scaffold_51325 (230-52) | |
| 439-588, gnl|echTel1|scaffold_321974 (151-308) | |
| 439-588, gnl|fr1|chrUn (301209255-301209403) | |
| 439-588, gnl|hg17|chr19 (41079106-41079258) | |
| 439-588, gnl|Hg17|chr19 (41079282-41079133) | |
| 439-588, gnl|loxAfr1|scaffold_31602 (4162-4012) | |
| 439-588, gnl|mm7|chr7 (27369096-27368945) | |
| 439-588, gnl|Mm7|chr7 (27368919-27369068) | |
| 439-588, gnl|monDom2|scaffold_139 (1969953-1970128) | |
| 439-588, gnl|panTro1|chr20 (37920430-37920582) | |
| 439-588, gnl|rheMac2|chr19 (42379694-42379846) | |
| 439-588, gnl|rn3|chr1 (85455928-85455777) | |
| 439-588, gnl|tetNig1|chr8 (6213392-6213517) | |
| 639-792, gnl|bosTau2|chr18 (41704260-41704107) | |
| 639-792, gnl|Hg17|chr19 (41078871-41078718) | |
| 639-792, gnl|Mm7|chr7 (27369327-27369480) | |
| 904-1073, gnl|bosTau2|chr18 (41701069-41700900) | |
| 904-1073, gnl|canFam2|chr1 (119678497-119678316) | |
| 904-1073, gnl|danRer3|chr17 (30560080-30560257) | |
| 904-1073, gnl|dasNov1|scaffold_51325 (2548-2365) | |
| 904-1073, gnl|echTel1|scaffold_52372 (3100-2921) | |
| 904-1073, gnl|fr1|chrUn (301208229-301208405) | |
| 904-1073, gnl|hg17|chr19 (41072620-41072804) | |
| 904-1073, gnl|Hg17|chr19 (41072798-41072625) | |
| 904-1073, gnl|loxAfr1|scaffold_80824 (12028-12208) | |
| 904-1073, gnl|mm7|chr7 (27370812-27370632) | |
| 904-1073, gnl|Mm7|chr7 (27370636-27370805) | |
| 904-1073, gnl|monDom2|scaffold_139 (1968769-1968957) | |
| 904-1073, gnl|oryCun1|scaffold_161830 (4228-4048) | |
| 904-1073, gnl|panTro1|chr20 (37914914-37915098) | |
| 904-1073, gnl|rheMac2|chr19 (42373372-42373556) | |
| 904-1073, gnl|rn3|chr1 (85459087-85458907) | |
| 904-1073, gnl|tetNig1|chr8 (6212498-6212676) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 142-335, gnl|bosTau2|chr18 (41705162-41704969) | |
| 142-335, gnl|Hg17|chr19 (41079847-41079654) | |
| 142-335, gnl|Mm7|chr7 (27368432-27368622) | |
| 439-588, gnl|bosTau2|chr18 (41704666-41704517) | |
| 439-588, gnl|canFam2|chr1 (119675741-119675592) | |
| 439-588, gnl|danRer3|chr17 (30566871-30566996) | |
| 439-588, gnl|dasNov1|scaffold_51325 (230-52) | |
| 439-588, gnl|echTel1|scaffold_321974 (151-308) | |
| 439-588, gnl|fr1|chrUn (301209255-301209403) | |
| 439-588, gnl|hg17|chr19 (41079106-41079258) | |
| 439-588, gnl|Hg17|chr19 (41079282-41079133) | |
| 439-588, gnl|loxAfr1|scaffold_31602 (4162-4012) | |
| 439-588, gnl|mm7|chr7 (27369096-27368945) | |
| 439-588, gnl|Mm7|chr7 (27368919-27369068) | |
| 439-588, gnl|monDom2|scaffold_139 (1969953-1970128) | |
| 439-588, gnl|panTro1|chr20 (37920430-37920582) | |
| 439-588, gnl|rheMac2|chr19 (42379694-42379846) | |
| 439-588, gnl|rn3|chr1 (85455928-85455777) | |
| 439-588, gnl|tetNig1|chr8 (6213392-6213517) | |
| 639-792, gnl|bosTau2|chr18 (41704260-41704107) | |
| 639-792, gnl|Hg17|chr19 (41078871-41078718) | |
| 639-792, gnl|Mm7|chr7 (27369327-27369480) | |
| 904-1073, gnl|bosTau2|chr18 (41701069-41700900) | |
| 904-1073, gnl|canFam2|chr1 (119678497-119678316) | |
| 904-1073, gnl|danRer3|chr17 (30560080-30560257) | |
| 904-1073, gnl|dasNov1|scaffold_51325 (2548-2365) | |
| 904-1073, gnl|echTel1|scaffold_52372 (3100-2921) | |
| 904-1073, gnl|fr1|chrUn (301208229-301208405) | |
| 904-1073, gnl|hg17|chr19 (41072620-41072804) | |
| 904-1073, gnl|Hg17|chr19 (41072798-41072625) | |
| 904-1073, gnl|loxAfr1|scaffold_80824 (12028-12208) | |
| 904-1073, gnl|mm7|chr7 (27370812-27370632) | |
| 904-1073, gnl|Mm7|chr7 (27370636-27370805) | |
| 904-1073, gnl|monDom2|scaffold_139 (1968769-1968957) | |
| 904-1073, gnl|oryCun1|scaffold_161830 (4228-4048) | |
| 904-1073, gnl|panTro1|chr20 (37914914-37915098) | |
| 904-1073, gnl|rheMac2|chr19 (42373372-42373556) | |
| 904-1073, gnl|rn3|chr1 (85459087-85458907) | |
| 904-1073, gnl|tetNig1|chr8 (6212498-6212676) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) | |
| ill (0.175593) | |
| ecc (0.115035) |