Non-Coding RNA Search

Ss1.1-recc2812c_i16.5

Sequence:


               
               TTTTTTTTCAAGTGGGGAGGAAGGGAAGCTAGATGGGACTATGAGAGACTTGATTTTGGT
GCTAAAGTTCCCCAGTTCATATGTGACATCTGAAAAAAAAACAACAAAAAACGAGAGAAA
AGCTTAAAAAAAAACATGTAAGGGGTGAGCAGTTAATGGTATTCATTCCACATACAATAT
CTGTGTAAAACGATTTCCCGTAGAAGTAGCTTTAATGGTTTTGGCTCTAGAATACCGTAG
GTCTATCCTTAGAGCACTCACGCCATGCTTTTTTCCCTGGGTTTTAAACTTCATATAACT
TTCAGAAATGGGAGAGCAAAAATTTGGCTTGTCACTGCACATCATTATAAAAAAGCTTAT
TTAACTTATCAAAACGTATTTATTGCCAAACTATGCTTTTTTGGTTAATTTGGTTCATAT
TTATCGGGATGACAAATCCATAGAATATATTCTTTTATGTTAAATTATGATCTTCATATT
AATCTTAAAATTTGGTGACGTGTCTTTTTCCTTTTTTTCCACAGTTTTAATATATTATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTCAAGTGGGGAGGAAGGGAAGCTAGATGGGACTATGAGAGACTTGATTTTGGT
GCTAAAGTTCCCCAGTTCATATGTGACATCTGAAAAAAAAACAACAAAAAACGAGAGAAA
AGCTTAAAAAAAAACATGTAAGGGGTGAGCAGTTAATGGTATTCATTCCACATACAATAT
CTGTGTAAAACGATTTCCCGTAGAAGTAGCTTTAATGGTTTTGGCTCTAGAATACCGTAG
GTCTATCCTTAGAGCACTCACGCCATGCTTTTTTCCCTGGGTTTTAAACTTCATATAACT
TTCAGAAATGGGAGAGCAAAAATTTGGCTTGTCACTGCACATCATTATAAAAAAGCTTAT
TTAACTTATCAAAACGTATTTATTGCCAAACTATGCTTTTTTGGTTAATTTGGTTCATAT
TTATCGGGATGACAAATCCATAGAATATATTCTTTTATGTTAAATTATGATCTTCATATT
AATCTTAAAATTTGGTGACGTGTCTTTTTCCTTTTTTTCCACAGTTTTAATATATTATTC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-540, gnl|bosTau2|chr10 (54879430-54878887)
               

               
               1-540, gnl|Hg17|chr14 (68325208-68324659)
               

               
               1-540, gnl|Mm7|chr12 (78071834-78071283)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-540, gnl|bosTau2|chr10 (54879430-54878887)
               

               
               1-540, gnl|Hg17|chr14 (68325208-68324659)
               

               
               1-540, gnl|Mm7|chr12 (78071834-78071283)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               jca (0.34188)
               

               
               isp (0.150376)
               

               
               lnt (0.142308)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.34188)
               

               
               isp (0.150376)
               

               
               lnt (0.142308)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

	1-540, gnl\|bosTau2\|chr10 (54879430-54878887)
	1-540, gnl\|Hg17\|chr14 (68325208-68324659)
	1-540, gnl\|Mm7\|chr12 (78071834-78071283)

	jca (0.34188)
	isp (0.150376)
	lnt (0.142308)
	ecc (0.115035)
	cbl (0.114797)