Ss1.1-recc2812c_k3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCCTCCTCTGCGGGACCGTCCCCGGGGCACTCCGCTGCCTTCCCTCTTCGGGGACCAGC CAGACCTCACGTGCTTGATCGACACCAACTTCTCTGCACACCCGAGGCTCCCAGAGCTGG ATCACCCGGAGCCCCGGCACCGGTCAGGCTGCCGCCGCACTCAGGACTGTACAGGCTATG ACTTCAGCCGCCTGGTGCAGCGAGCGTATCAGGAGGAGGGAATGGTTCCCATGCACACGC CAGCCCCGCGCCCACCCTCGCCTGGGCCCACGCCACCCCAGACCCCTGAGGATGAAGGCA GCTTTCCTCCGGAGAAGGGCTCCCCTTCCTTCACCTGGGCCCCCAGTGCAGACGGCTCCA TCTGGAGCTTGGAGCTGCAGGGCAACCTCATCGTGGTGGGGCGGAGCAGCGGCCGGCTAG AGGTGTGGGACGCCATTGAAGGCATGCTGCGCTGTAGCAGTGAGGAGGTGGCCTCGGGCA TCACAGCCCTCGTCTTTCTGGACAAAAGGATTGTGGCTGCCCGGCTCAACGGTTCCCTTG ACTTCTTCTCCTTGGAGACCCACACAGCCCTCAGCCCCCTGCAGTTCCGAGGGGCCCCAG GGCGGGGCAGTTCCCCCACATCCCCTGTGTACAGCAGCAGTGACACAGTGGTTTGTCACC TGACCCACACAGTGCCCTGTGCACACCAGAAGCCCATCACGGCCCTGAAGGCCGCTGCCG GGCGCCTTGTGACTGGGAGCCAGGACCACACACTGAGGGTGTTCCGTCTGGAGGACTCAT GCTGCCTCTTCACCCTGCAAGGCCACTCAGGGGCCATCACGACTGTGTACATTGACCAGA CCATGGTGCTGGCCAGCGGAGGACAAGATGGGGCCATCTGCCTGTGGGATGTGCTGACTG GCAGCCGGGTCAGCCACATGTTCGCTCACCGTGGGGATGTCACCTCCCTCACCTGTACCA CCTCCTGTGTCATCAGCAGTGGCCTTGATGACCTCATCAGCATCTGGGACCGCAGCACAG GCATCAAGCTCTACTCCATTCAGCAGGACCTGGGCTGTGGTGCAAGCTTGGGCGTCATCT CAGACAACCTGCTGGTGACTGGTGGCCAAGGCTGTGTTTCCTTTTGGGACCTAAACTACG GGGACCTGTTACAGACGGTCTACCTGGGGAAGGACAGTGAGGCCCAGCCTGCCCGCCAGA TCCTGGTGCTGGACAATGCCGCTATTGTCTGCAACTTTGGCAGCGAGCTCAGCCTGGTGT ATGTGCCCTCTGTGCTGGAGAAGCTGGACTGAGAGTGAGCAACAGCCATAGCCCCCTGGC TGGCTGCTCAGGGGCCTCTCTGCCCTTCTGGCTGTGGGGCAATGCACTGGATCTGGGCTG GGGGGAGGGGAGGAAGAGCCGAGTCTTCCGGTAGGCCCTCTGAACTGTCCTATCCTGCCT CATGACTGTAATATTAAACCTTTTTTTAAATGACAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCCTCCTCTGCGGGACCGTCCCCGGGGCACTCCGCTGCCTTCCCTCTTCGGGGACCAGC CAGACCTCACGTGCTTGATCGACACCAACTTCTCTGCACACCCGAGGCTCCCAGAGCTGG ATCACCCGGAGCCCCGGCACCGGTCAGGCTGCCGCCGCACTCAGGACTGTACAGGCTATG ACTTCAGCCGCCTGGTGCAGCGAGCGTATCAGGAGGAGGGAATGGTTCCCATGCACACGC CAGCCCCGCGCCCACCCTCGCCTGGGCCCACGCCACCCCAGACCCCTGAGGATGAAGGCA GCTTTCCTCCGGAGAAGGGCTCCCCTTCCTTCACCTGGGCCCCCAGTGCAGACGGCTCCA TCTGGAGCTTGGAGCTGCAGGGCAACCTCATCGTGGTGGGGCGGAGCAGCGGCCGGCTAG AGGTGTGGGACGCCATTGAAGGCATGCTGCGCTGTAGCAGTGAGGAGGTGGCCTCGGGCA TCACAGCCCTCGTCTTTCTGGACAAAAGGATTGTGGCTGCCCGGCTCAACGGTTCCCTTG ACTTCTTCTCCTTGGAGACCCACACAGCCCTCAGCCCCCTGCAGTTCCGAGGGGCCCCAG GGCGGGGCAGTTCCCCCACATCCCCTGTGTACAGCAGCAGTGACACAGTGGTTTGTCACC TGACCCACACAGTGCCCTGTGCACACCAGAAGCCCATCACGGCCCTGAAGGCCGCTGCCG GGCGCCTTGTGACTGGGAGCCAGGACCACACACTGAGGGTGTTCCGTCTGGAGGACTCAT GCTGCCTCTTCACCCTGCAAGGCCACTCAGGGGCCATCACGACTGTGTACATTGACCAGA CCATGGTGCTGGCCAGCGGAGGACAAGATGGGGCCATCTGCCTGTGGGATGTGCTGACTG GCAGCCGGGTCAGCCACATGTTCGCTCACCGTGGGGATGTCACCTCCCTCACCTGTACCA CCTCCTGTGTCATCAGCAGTGGCCTTGATGACCTCATCAGCATCTGGGACCGCAGCACAG GCATCAAGCTCTACTCCATTCAGCAGGACCTGGGCTGTGGTGCAAGCTTGGGCGTCATCT CAGACAACCTGCTGGTGACTGGTGGCCAAGGCTGTGTTTCCTTTTGGGACCTAAACTACG GGGACCTGTTACAGACGGTCTACCTGGGGAAGGACAGTGAGGCCCAGCCTGCCCGCCAGA TCCTGGTGCTGGACAATGCCGCTATTGTCTGCAACTTTGGCAGCGAGCTCAGCCTGGTGT ATGTGCCCTCTGTGCTGGAGAAGCTGGACTGAGAGTGAGCAACAGCCATAGCCCCCTGGC TGGCTGCTCAGGGGCCTCTCTGCCCTTCTGGCTGTGGGGCAATGCACTGGATCTGGGCTG GGGGGAGGGGAGGAAGAGCCGAGTCTTCCGGTAGGCCCTCTGAACTGTCCTATCCTGCCT CATGACTGTAATATTAAACCTTTTTTTAAATGACAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 242-1294, - strand, RNAz p=0.696628 | |
| 284-392, - strand, RNAz p=0.911276 | |
| 643-760, - strand, RNAz p=0.927085 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 242-1294, - strand, RNAz p=0.696628 | |
| 284-392, - strand, RNAz p=0.911276 | |
| 643-760, - strand, RNAz p=0.927085 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 1-1334, gnl|bosTau2|chr3 (64177882-64179171) | |
| 1-1334, gnl|Hg17|chr3 (47434216-47430303) | |
| 1-1334, gnl|Mm7|chr9 (110079119-110082891) | |
| 3-425, gnl|bosTau2|chr22 (40310497-40310078) | |
| 3-425, gnl|Hg17|chr3 (47434214-47433795) | |
| 3-425, gnl|Mm7|chr9 (110079121-110079534) | |
| 568-760, gnl|bosTau2|chr22 (40308294-40308101) | |
| 568-760, gnl|canFam2|chr20 (44483703-44483502) | |
| 568-760, gnl|danRer3|chr16 (38923940-38924123) | |
| 568-760, gnl|echTel1|scaffold_302195 (1720-1919) | |
| 568-760, gnl|fr1|chrUn (149545816-149546000) | |
| 568-760, gnl|galGal2|chr2 (479168-478969) | |
| 568-760, gnl|hg17|chr3 (47431305-47431505) | |
| 568-760, gnl|Hg17|chr3 (47431512-47431319) | |
| 568-760, gnl|loxAfr1|scaffold_27090 (40398-40198) | |
| 568-760, gnl|mm7|chr9 (110081960-110081763) | |
| 568-760, gnl|Mm7|chr9 (110081754-110081946) | |
| 568-760, gnl|monDom2|scaffold_5 (82121727-82121929) | |
| 568-760, gnl|oryCun1|scaffold_185312 (120-320) | |
| 568-760, gnl|panTro1|chr2 (48893672-48893872) | |
| 568-760, gnl|rheMac2|chr2 (89107197-89106997) | |
| 568-760, gnl|rn3|chr8 (114779772-114779574) | |
| 568-760, gnl|tetNig1|chrUn_random (40949737-40949542) | |
| 568-760, gnl|xenTro1|scaffold_1118 (81730-81936) | |
| 1030-1323, gnl|bosTau2|chr22 (40307005-40306713) | |
| 1030-1323, gnl|Hg17|chr3 (47430611-47430315) | |
| 1030-1323, gnl|Mm7|chr9 (110082584-110082891) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-1334, gnl|bosTau2|chr3 (64177882-64179171) | |
| 1-1334, gnl|Hg17|chr3 (47434216-47430303) | |
| 1-1334, gnl|Mm7|chr9 (110079119-110082891) | |
| 3-425, gnl|bosTau2|chr22 (40310497-40310078) | |
| 3-425, gnl|Hg17|chr3 (47434214-47433795) | |
| 3-425, gnl|Mm7|chr9 (110079121-110079534) | |
| 568-760, gnl|bosTau2|chr22 (40308294-40308101) | |
| 568-760, gnl|canFam2|chr20 (44483703-44483502) | |
| 568-760, gnl|danRer3|chr16 (38923940-38924123) | |
| 568-760, gnl|echTel1|scaffold_302195 (1720-1919) | |
| 568-760, gnl|fr1|chrUn (149545816-149546000) | |
| 568-760, gnl|galGal2|chr2 (479168-478969) | |
| 568-760, gnl|hg17|chr3 (47431305-47431505) | |
| 568-760, gnl|Hg17|chr3 (47431512-47431319) | |
| 568-760, gnl|loxAfr1|scaffold_27090 (40398-40198) | |
| 568-760, gnl|mm7|chr9 (110081960-110081763) | |
| 568-760, gnl|Mm7|chr9 (110081754-110081946) | |
| 568-760, gnl|monDom2|scaffold_5 (82121727-82121929) | |
| 568-760, gnl|oryCun1|scaffold_185312 (120-320) | |
| 568-760, gnl|panTro1|chr2 (48893672-48893872) | |
| 568-760, gnl|rheMac2|chr2 (89107197-89106997) | |
| 568-760, gnl|rn3|chr8 (114779772-114779574) | |
| 568-760, gnl|tetNig1|chrUn_random (40949737-40949542) | |
| 568-760, gnl|xenTro1|scaffold_1118 (81730-81936) | |
| 1030-1323, gnl|bosTau2|chr22 (40307005-40306713) | |
| 1030-1323, gnl|Hg17|chr3 (47430611-47430315) | |
| 1030-1323, gnl|Mm7|chr9 (110082584-110082891) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| cov (0.660764) | |
| cag (0.453583) | |
| fhi (0.339155) | |
| csp (0.322373) | |
| fce (0.271592) | |
| cly (0.241284) | |
| ece (0.229305) | |
| nms (0.213858) | |
| col (0.195008) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.660764) | |
| cag (0.453583) | |
| fhi (0.339155) | |
| csp (0.322373) | |
| fce (0.271592) | |
| cly (0.241284) | |
| ece (0.229305) | |
| nms (0.213858) | |
| col (0.195008) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| eje (0.0988338) |