Ss1.1-recc2812c_p13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGACGCGTGGGTGCGCGAAGATCTGCCAACATGCCTGATCCGTCCAAATCGGCTCCGG CACCCAAGAAGGGTTCTAAGAAGGCTGTTACCAAAGCGCAGAAAAAAGATGGCAAAAAGC GCAAGCGCAGCCGGAAAGAAAGCTATTCCATCTACGTGTACAAAGTGTTGAAGCAAGTAC ATCCCGACACGGGCATCTCTTCTAAGGCCATGGGCATAATGAATTCCTTCGTCAACGACA TCTTTGAGCGCATCGCCAGCGAGGCTTCCCGCTTGGCGCACTACAACAAGCGCTCTACCA TCACGTCTCGGGAGGTGCAGACAGCTGTGCGTCTGCTGTTGCCTGGCGAGCTGGCCAAAC ACGCCGTGTCTGAAGGTACCAAAGCCGTCACCAAGTACACGAGCTCCAAGTGAGGCGCGC CGAGGCGCCCGGGAACCCAAAGGCTCTTTTCAGAGCCACCCACAAGATCGAGAAAGGGTT TGGAACACGTGAAGTGTTATGTAAACGCATCCTTTTCTGCTCCATAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGACGCGTGGGTGCGCGAAGATCTGCCAACATGCCTGATCCGTCCAAATCGGCTCCGG CACCCAAGAAGGGTTCTAAGAAGGCTGTTACCAAAGCGCAGAAAAAAGATGGCAAAAAGC GCAAGCGCAGCCGGAAAGAAAGCTATTCCATCTACGTGTACAAAGTGTTGAAGCAAGTAC ATCCCGACACGGGCATCTCTTCTAAGGCCATGGGCATAATGAATTCCTTCGTCAACGACA TCTTTGAGCGCATCGCCAGCGAGGCTTCCCGCTTGGCGCACTACAACAAGCGCTCTACCA TCACGTCTCGGGAGGTGCAGACAGCTGTGCGTCTGCTGTTGCCTGGCGAGCTGGCCAAAC ACGCCGTGTCTGAAGGTACCAAAGCCGTCACCAAGTACACGAGCTCCAAGTGAGGCGCGC CGAGGCGCCCGGGAACCCAAAGGCTCTTTTCAGAGCCACCCACAAGATCGAGAAAGGGTT TGGAACACGTGAAGTGTTATGTAAACGCATCCTTTTCTGCTCCATAGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 66-526, - strand, RNAz p=0.937333 | |
| 344-463, - strand, RNAz p=0.596673 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 66-526, - strand, RNAz p=0.937333 | |
| 344-463, - strand, RNAz p=0.596673 |
| ncRNA annotation: 1 entry(ies) | More info |
| ncRNA annotation: 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
| 437-462, , RaveNnA Score=39.41 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 18-528, gnl|bosTau2|chr7 (2957904-2958420) | |
| 18-528, gnl|Hg17|chr1 (224952550-224953037) | |
| 18-528, gnl|Mm7|chr11 (59035992-59035517) | |
| 24-463, gnl|bosTau2|chr12 (1662187-1662625) | |
| 24-463, gnl|canFam2|chr35 (27198225-27198601) | |
| 24-463, gnl|danRer3|chr7 (2229353-2228983) | |
| 24-463, gnl|dasNov1|scaffold_55031 (3910-3535) | |
| 24-463, gnl|echTel1|scaffold_285433 (41564-41188) | |
| 24-463, gnl|fr1|chrUn (216208978-216209348) | |
| 24-463, gnl|galGal2|chr1 (44824559-44824183) | |
| 24-463, gnl|hg17|chr6 (26359858-26360234) | |
| 24-463, gnl|Hg17|chr6 (26359849-26360283) | |
| 24-463, gnl|loxAfr1|scaffold_7950 (46901-47277) | |
| 24-463, gnl|mm7|chr13 (22909343-22908967) | |
| 24-463, gnl|monDom2|scaffold_66 (8221566-8221942) | |
| 24-463, gnl|oryCun1|scaffold_153763 (20488-20112) | |
| 24-463, gnl|panTro1|chr5_random (21073318-21073694) | |
| 24-463, gnl|rheMac2|chr4 (26239673-26240049) | |
| 24-463, gnl|rn3|chr17 (50355316-50354940) | |
| 24-463, gnl|tetNig1|chrUn_random (129684158-129683788) | |
| 24-463, gnl|xenTro1|scaffold_450 (689675-689299) | |
| 31-411, gnl|bosTau2|chr10 (15825823-15825443) | |
| 31-411, gnl|Hg17|chr6 (27883670-27883285) | |
| 31-411, gnl|Mm7|chr13 (21120110-21120490) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 18-528, gnl|bosTau2|chr7 (2957904-2958420) | |
| 18-528, gnl|Hg17|chr1 (224952550-224953037) | |
| 18-528, gnl|Mm7|chr11 (59035992-59035517) | |
| 24-463, gnl|bosTau2|chr12 (1662187-1662625) | |
| 24-463, gnl|canFam2|chr35 (27198225-27198601) | |
| 24-463, gnl|danRer3|chr7 (2229353-2228983) | |
| 24-463, gnl|dasNov1|scaffold_55031 (3910-3535) | |
| 24-463, gnl|echTel1|scaffold_285433 (41564-41188) | |
| 24-463, gnl|fr1|chrUn (216208978-216209348) | |
| 24-463, gnl|galGal2|chr1 (44824559-44824183) | |
| 24-463, gnl|hg17|chr6 (26359858-26360234) | |
| 24-463, gnl|Hg17|chr6 (26359849-26360283) | |
| 24-463, gnl|loxAfr1|scaffold_7950 (46901-47277) | |
| 24-463, gnl|mm7|chr13 (22909343-22908967) | |
| 24-463, gnl|monDom2|scaffold_66 (8221566-8221942) | |
| 24-463, gnl|oryCun1|scaffold_153763 (20488-20112) | |
| 24-463, gnl|panTro1|chr5_random (21073318-21073694) | |
| 24-463, gnl|rheMac2|chr4 (26239673-26240049) | |
| 24-463, gnl|rn3|chr17 (50355316-50354940) | |
| 24-463, gnl|tetNig1|chrUn_random (129684158-129683788) | |
| 24-463, gnl|xenTro1|scaffold_450 (689675-689299) | |
| 31-411, gnl|bosTau2|chr10 (15825823-15825443) | |
| 31-411, gnl|Hg17|chr6 (27883670-27883285) | |
| 31-411, gnl|Mm7|chr13 (21120110-21120490) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.115035) |