Non-Coding RNA Search

Ss1.1-recc2812c_p18.5

Sequence:


               
               GGCCGAGGAATACGAGGATTCTTCCACCAAGCCACCCAAGAGCCGACGAAAAGCAGCTCT
GTCCAGCCCCCGAAGTCGAAAGAATGCCGCCCAGCCCCCCAATGCTGAGGAAGAGTCAGG
CTCCAGCAGTGCCTCGGAGGAAGAAGACACCAAACCGAAGCCCACCAAGCGGAAACGGAA
AGGGTCCTCTGCAGTGGGCTCTGACAGTGACTGAGGCCCCGGGTCTCCCCTGCCGCCCCA
GTCGGACTGCCCCCTCCCCTCCTTGGTGAATCAAAGGTTAACAGGGCTGGGGAGATGCCG
GGGAACACCCTGTCCCCATCCCAGAGCTCCCCTGTGAGAAGGACGAGCTGCCTCCTCCAG
CCCAGCCTGAGAAGCTGCCATGCGGCCCCGGCGCCTCCTCCCTCCTCTCTGGGGCCTGCA
GACCCCCGACACACTGCTGCTCCCACTGAAGCCAGAGGCCGTACACAACCTGAACTGCGG
TGGACGCCTTCAGCCCCTGCCCCCTCCCGCAGCCTCCCCAGAGGCTGTTTCAACAGAGAA
GAGAAATGGCAAAGGGGCAGCTGGCCGGAGAGGTTAGACTGAGAGTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCGAGGAATACGAGGATTCTTCCACCAAGCCACCCAAGAGCCGACGAAAAGCAGCTCT
GTCCAGCCCCCGAAGTCGAAAGAATGCCGCCCAGCCCCCCAATGCTGAGGAAGAGTCAGG
CTCCAGCAGTGCCTCGGAGGAAGAAGACACCAAACCGAAGCCCACCAAGCGGAAACGGAA
AGGGTCCTCTGCAGTGGGCTCTGACAGTGACTGAGGCCCCGGGTCTCCCCTGCCGCCCCA
GTCGGACTGCCCCCTCCCCTCCTTGGTGAATCAAAGGTTAACAGGGCTGGGGAGATGCCG
GGGAACACCCTGTCCCCATCCCAGAGCTCCCCTGTGAGAAGGACGAGCTGCCTCCTCCAG
CCCAGCCTGAGAAGCTGCCATGCGGCCCCGGCGCCTCCTCCCTCCTCTCTGGGGCCTGCA
GACCCCCGACACACTGCTGCTCCCACTGAAGCCAGAGGCCGTACACAACCTGAACTGCGG
TGGACGCCTTCAGCCCCTGCCCCCTCCCGCAGCCTCCCCAGAGGCTGTTTCAACAGAGAA
GAGAAATGGCAAAGGGGCAGCTGGCCGGAGAGGTTAGACTGAGAGTGC

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

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               1-137, gnl|bosTau2|chr3 (7991138-7991274)
               

               
               1-137, gnl|canFam2|chr7 (46301813-46301614)
               

               
               1-137, gnl|danRer3|chrNA (18926815-18927002)
               

               
               1-137, gnl|dasNov1|scaffold_76606 (489-291)
               

               
               1-137, gnl|echTel1|scaffold_297408 (2699-2908)
               

               
               1-137, gnl|fr1|chrUn (39653484-39653301)
               

               
               1-137, gnl|hg17|chr1 (150558462-150558665)
               

               
               1-137, gnl|Hg17|chr1 (150558495-150558631)
               

               
               1-137, gnl|mm7|chr3 (90523116-90522915)
               

               
               1-137, gnl|Mm7|chr3 (90523082-90522946)
               

               
               1-137, gnl|monDom2|scaffold_59 (4301833-4301607)
               

               
               1-137, gnl|oryCun1|scaffold_191558 (7883-7681)
               

               
               1-137, gnl|panTro1|chr1 (132538403-132538606)
               

               
               1-137, gnl|rheMac2|chr1 (132286049-132286252)
               

               
               1-137, gnl|rn3|chr2 (182601275-182601077)
               

               
               1-137, gnl|tetNig1|chrUn_random (10259802-10259981)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-137, gnl|bosTau2|chr3 (7991138-7991274)
               

               
               1-137, gnl|canFam2|chr7 (46301813-46301614)
               

               
               1-137, gnl|danRer3|chrNA (18926815-18927002)
               

               
               1-137, gnl|dasNov1|scaffold_76606 (489-291)
               

               
               1-137, gnl|echTel1|scaffold_297408 (2699-2908)
               

               
               1-137, gnl|fr1|chrUn (39653484-39653301)
               

               
               1-137, gnl|hg17|chr1 (150558462-150558665)
               

               
               1-137, gnl|Hg17|chr1 (150558495-150558631)
               

               
               1-137, gnl|mm7|chr3 (90523116-90522915)
               

               
               1-137, gnl|Mm7|chr3 (90523082-90522946)
               

               
               1-137, gnl|monDom2|scaffold_59 (4301833-4301607)
               

               
               1-137, gnl|oryCun1|scaffold_191558 (7883-7681)
               

               
               1-137, gnl|panTro1|chr1 (132538403-132538606)
               

               
               1-137, gnl|rheMac2|chr1 (132286049-132286252)
               

               
               1-137, gnl|rn3|chr2 (182601275-182601077)
               

               
               1-137, gnl|tetNig1|chrUn_random (10259802-10259981)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	1-137, gnl\|bosTau2\|chr3 (7991138-7991274)
	1-137, gnl\|canFam2\|chr7 (46301813-46301614)
	1-137, gnl\|danRer3\|chrNA (18926815-18927002)
	1-137, gnl\|dasNov1\|scaffold_76606 (489-291)
	1-137, gnl\|echTel1\|scaffold_297408 (2699-2908)
	1-137, gnl\|fr1\|chrUn (39653484-39653301)
	1-137, gnl\|hg17\|chr1 (150558462-150558665)
	1-137, gnl\|Hg17\|chr1 (150558495-150558631)
	1-137, gnl\|mm7\|chr3 (90523116-90522915)
	1-137, gnl\|Mm7\|chr3 (90523082-90522946)
	1-137, gnl\|monDom2\|scaffold_59 (4301833-4301607)
	1-137, gnl\|oryCun1\|scaffold_191558 (7883-7681)
	1-137, gnl\|panTro1\|chr1 (132538403-132538606)
	1-137, gnl\|rheMac2\|chr1 (132286049-132286252)
	1-137, gnl\|rn3\|chr2 (182601275-182601077)
	1-137, gnl\|tetNig1\|chrUn_random (10259802-10259981)