Ss1.1-recc2813c_c4.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGGCTGCAGGAATTGCACGAGGGCTACTACCTGCTGGCGGTGGACAAGCAGTGGCACAT GCGCTGCCTCAAGTGCTGCGAGTGTAAACTCAACCTGGAGTCGGAGCTCACCTGTTTCAG CAAGGATGGAAGCATCTACTGCAAAGAAGACTACTACAGGCGGTTCTCTGTGCAGCGCTG CGCCCGCTGCCACCTGGGCATCTCGGCTTCGGAGATGGTGATGCGAGCTCGGGACTTGGT TTATCACCTCAACTGCTTCACGTGCACCACATGTAACAAGATGCTGACCACGGGTGACCA CTTCGGCATGAAGGACAGCCTGGTCTACTGCCGCTTGCACTTCGAGGCGCTGCTGCAGGG CGAGTACCCCGCGCACTTCAATCATGCCGACGTGGCGGCTGCAGCAGCGGCAGCTGCAGC GGCCAAGAGTGCGGGGCTGGGTGCAGCCGGGGCCAATCCTCTGGGTCTTCCGTACTACAA TGGCGTGGGCACGGTGCAGAAGGGGCGGCCGAGGAAGCGGAAGAGCCCCGGGCCCGGTGC GGATCTGGCGGCCTACAACGCTGCGCTGAGCTGCAATGAGAACGACGCGGAACACCTGGA CCGGGACCAGCCCTACCCTGATGCAGCCAGAAGACGAAGCGCATGCGCGCTTCCTTCAAG CACCACCAGCTTCGGACCATGAAGTCTTACTTTGCCATTAACCACAACCCCGACGCCAAG GACTTGAAGCAACTCGCGCAAAAGACGGGCCTCACCAAGCGAGTCCTCCAGGTCTGGTTT CAGAACGCCCGGGCCAAGTTCAGGCGCAACCTCTTACGGCAGGAAAACACGGGCGTGGAC AAGTCCACGGAGGCGGCGCTGCAGACGGGGACGCCGTCGGGGCCCGCTTCGGAGCTGTCC AACGCCTCGCTCAGCCCCTCCAGCACGCCCACCACCCTCACAGACTTGACTAGTCCCACC CTGCCGACTGTGACGTCCGTCTTAACTTCTGTGCCTGGCAACCTGGAGGGCCACGAGCCT CACAGCCCCTCGCAAACGACTCTTACCAACCTTTTCTAATGACTCGCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGGCTGCAGGAATTGCACGAGGGCTACTACCTGCTGGCGGTGGACAAGCAGTGGCACAT GCGCTGCCTCAAGTGCTGCGAGTGTAAACTCAACCTGGAGTCGGAGCTCACCTGTTTCAG CAAGGATGGAAGCATCTACTGCAAAGAAGACTACTACAGGCGGTTCTCTGTGCAGCGCTG CGCCCGCTGCCACCTGGGCATCTCGGCTTCGGAGATGGTGATGCGAGCTCGGGACTTGGT TTATCACCTCAACTGCTTCACGTGCACCACATGTAACAAGATGCTGACCACGGGTGACCA CTTCGGCATGAAGGACAGCCTGGTCTACTGCCGCTTGCACTTCGAGGCGCTGCTGCAGGG CGAGTACCCCGCGCACTTCAATCATGCCGACGTGGCGGCTGCAGCAGCGGCAGCTGCAGC GGCCAAGAGTGCGGGGCTGGGTGCAGCCGGGGCCAATCCTCTGGGTCTTCCGTACTACAA TGGCGTGGGCACGGTGCAGAAGGGGCGGCCGAGGAAGCGGAAGAGCCCCGGGCCCGGTGC GGATCTGGCGGCCTACAACGCTGCGCTGAGCTGCAATGAGAACGACGCGGAACACCTGGA CCGGGACCAGCCCTACCCTGATGCAGCCAGAAGACGAAGCGCATGCGCGCTTCCTTCAAG CACCACCAGCTTCGGACCATGAAGTCTTACTTTGCCATTAACCACAACCCCGACGCCAAG GACTTGAAGCAACTCGCGCAAAAGACGGGCCTCACCAAGCGAGTCCTCCAGGTCTGGTTT CAGAACGCCCGGGCCAAGTTCAGGCGCAACCTCTTACGGCAGGAAAACACGGGCGTGGAC AAGTCCACGGAGGCGGCGCTGCAGACGGGGACGCCGTCGGGGCCCGCTTCGGAGCTGTCC AACGCCTCGCTCAGCCCCTCCAGCACGCCCACCACCCTCACAGACTTGACTAGTCCCACC CTGCCGACTGTGACGTCCGTCTTAACTTCTGTGCCTGGCAACCTGGAGGGCCACGAGCCT CACAGCCCCTCGCAAACGACTCTTACCAACCTTTTCTAATGACTCGCG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 353-512, + strand, RNAz p=0.586783 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 353-512, + strand, RNAz p=0.586783 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 154-580, gnl|bosTau2|chr11 (76728722-76729145) | |
| 154-580, gnl|canFam2|chr9 (62184017-62183587) | |
| 154-580, gnl|danRer3|chrUn (182127259-182126865) | |
| 154-580, gnl|dasNov1|scaffold_2234 (22700-22272) | |
| 154-580, gnl|echTel1|scaffold_244122 (1149-713) | |
| 154-580, gnl|fr1|chrUn (280972241-280972633) | |
| 154-580, gnl|galGal2|chr17 (1204611-1204215) | |
| 154-580, gnl|hg17|chr9 (123856947-123857377) | |
| 154-580, gnl|Hg17|chr9 (123856949-123857372) | |
| 154-580, gnl|loxAfr1|scaffold_36389 (12872-12502) | |
| 154-580, gnl|mm7|chr2 (38361752-38362172) | |
| 154-580, gnl|Mm7|chr2 (38361754-38362175) | |
| 154-580, gnl|monDom2|scaffold_38 (17885977-17886400) | |
| 154-580, gnl|oryCun1|scaffold_184010 (67264-67706) | |
| 154-580, gnl|panTro1|chr11 (108594161-108594591) | |
| 154-580, gnl|rheMac2|chr15 (11742596-11742166) | |
| 154-580, gnl|rn3|chr3 (18028547-18028967) | |
| 154-580, gnl|tetNig1|chrUn_random (19928760-19928363) | |
| 154-580, gnl|xenTro1|scaffold_448 (721051-720653) | |
| 769-1068, gnl|bosTau2|chr11 (76744748-76745047) | |
| 769-1068, gnl|canFam2|chr9 (62167330-62167031) | |
| 769-1068, gnl|danRer3|chrUn (182116453-182116158) | |
| 769-1068, gnl|dasNov1|scaffold_2234 (6964-6664) | |
| 769-1068, gnl|echTel1|scaffold_57760 (192-491) | |
| 769-1068, gnl|fr1|chrUn (280976310-280976608) | |
| 769-1068, gnl|galGal2|chr17 (1189474-1189179) | |
| 769-1068, gnl|hg17|chr9 (123874248-123874547) | |
| 769-1068, gnl|Hg17|chr9 (123874250-123874549) | |
| 769-1068, gnl|loxAfr1|scaffold_1009 (119545-119844) | |
| 769-1068, gnl|mm7|chr2 (38376148-38376447) | |
| 769-1068, gnl|Mm7|chr2 (38376150-38376447) | |
| 769-1068, gnl|monDom2|scaffold_38 (17905773-17906068) | |
| 769-1068, gnl|oryCun1|scaffold_184010 (82206-82488) | |
| 769-1068, gnl|panTro1|chr11 (108611576-108611875) | |
| 769-1068, gnl|rheMac2|chr15 (11724642-11724343) | |
| 769-1068, gnl|rn3|chr3 (18042814-18043113) | |
| 769-1068, gnl|tetNig1|chrUn_random (19924983-19924684) | |
| 769-1068, gnl|xenTro1|scaffold_448 (693674-693379) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 154-580, gnl|bosTau2|chr11 (76728722-76729145) | |
| 154-580, gnl|canFam2|chr9 (62184017-62183587) | |
| 154-580, gnl|danRer3|chrUn (182127259-182126865) | |
| 154-580, gnl|dasNov1|scaffold_2234 (22700-22272) | |
| 154-580, gnl|echTel1|scaffold_244122 (1149-713) | |
| 154-580, gnl|fr1|chrUn (280972241-280972633) | |
| 154-580, gnl|galGal2|chr17 (1204611-1204215) | |
| 154-580, gnl|hg17|chr9 (123856947-123857377) | |
| 154-580, gnl|Hg17|chr9 (123856949-123857372) | |
| 154-580, gnl|loxAfr1|scaffold_36389 (12872-12502) | |
| 154-580, gnl|mm7|chr2 (38361752-38362172) | |
| 154-580, gnl|Mm7|chr2 (38361754-38362175) | |
| 154-580, gnl|monDom2|scaffold_38 (17885977-17886400) | |
| 154-580, gnl|oryCun1|scaffold_184010 (67264-67706) | |
| 154-580, gnl|panTro1|chr11 (108594161-108594591) | |
| 154-580, gnl|rheMac2|chr15 (11742596-11742166) | |
| 154-580, gnl|rn3|chr3 (18028547-18028967) | |
| 154-580, gnl|tetNig1|chrUn_random (19928760-19928363) | |
| 154-580, gnl|xenTro1|scaffold_448 (721051-720653) | |
| 769-1068, gnl|bosTau2|chr11 (76744748-76745047) | |
| 769-1068, gnl|canFam2|chr9 (62167330-62167031) | |
| 769-1068, gnl|danRer3|chrUn (182116453-182116158) | |
| 769-1068, gnl|dasNov1|scaffold_2234 (6964-6664) | |
| 769-1068, gnl|echTel1|scaffold_57760 (192-491) | |
| 769-1068, gnl|fr1|chrUn (280976310-280976608) | |
| 769-1068, gnl|galGal2|chr17 (1189474-1189179) | |
| 769-1068, gnl|hg17|chr9 (123874248-123874547) | |
| 769-1068, gnl|Hg17|chr9 (123874250-123874549) | |
| 769-1068, gnl|loxAfr1|scaffold_1009 (119545-119844) | |
| 769-1068, gnl|mm7|chr2 (38376148-38376447) | |
| 769-1068, gnl|Mm7|chr2 (38376150-38376447) | |
| 769-1068, gnl|monDom2|scaffold_38 (17905773-17906068) | |
| 769-1068, gnl|oryCun1|scaffold_184010 (82206-82488) | |
| 769-1068, gnl|panTro1|chr11 (108611576-108611875) | |
| 769-1068, gnl|rheMac2|chr15 (11724642-11724343) | |
| 769-1068, gnl|rn3|chr3 (18042814-18043113) | |
| 769-1068, gnl|tetNig1|chrUn_random (19924983-19924684) | |
| 769-1068, gnl|xenTro1|scaffold_448 (693674-693379) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.23007) | |
| ece (0.229305) |