Non-Coding RNA Search

Ss1.1-recc2815c_a9.5

Sequence:


               
               GATGGAATCATTATATGCTTGCGGGGGTGGAGGGAGAGGGTTGCANGGGTAATGGAGCAG
GTGAAAGTGGCACTTGGCCAGAGCTGCGGAGTTGATTCATTTGTGCCTGGACTCATACAG
AGAGAAATATTAGGGTCAACCCTGCCGTGGGAGGTCACTCTGCATGCCAGCCCCAAGGAC
GAGGCCCTTAAAATGATGCTGCTGAGTCAATGGGCGTTTATTGTGTTCCCAGTGCCCTAC
CTGATCAGCACCATGGGTGAGAACAAGAAGGGGCAGTTACATAAAAGGAACAGAAGCTTC
AGGGAGCATCAGGGTGAGTGATGAGTAATGTAACTTGCCCTCTACCAGGGATTCTAACCA
CAGGTGGAAAATGTCATTAATCAGCCCAGCATCTTTACAGCCTCCATCTGCTGGCATCTG
GGAACCCAAACTCCCAGATGGCCAGGTCCCCTGTGGCCTCTTACCCAGACAGCGGCAGCA
GCAGATGCAGATTTGTACCAGCAGGAACAGCTGACTAGCTTGGCCACAGGCCAGACCATT
GCTTGTCTTGCCAAAGGGAATGACTAGATCCTGCTCTCTGGAGGTTGAAAACACACAGGC
TGAAACACCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGGAATCATTATATGCTTGCGGGGGTGGAGGGAGAGGGTTGCANGGGTAATGGAGCAG
GTGAAAGTGGCACTTGGCCAGAGCTGCGGAGTTGATTCATTTGTGCCTGGACTCATACAG
AGAGAAATATTAGGGTCAACCCTGCCGTGGGAGGTCACTCTGCATGCCAGCCCCAAGGAC
GAGGCCCTTAAAATGATGCTGCTGAGTCAATGGGCGTTTATTGTGTTCCCAGTGCCCTAC
CTGATCAGCACCATGGGTGAGAACAAGAAGGGGCAGTTACATAAAAGGAACAGAAGCTTC
AGGGAGCATCAGGGTGAGTGATGAGTAATGTAACTTGCCCTCTACCAGGGATTCTAACCA
CAGGTGGAAAATGTCATTAATCAGCCCAGCATCTTTACAGCCTCCATCTGCTGGCATCTG
GGAACCCAAACTCCCAGATGGCCAGGTCCCCTGTGGCCTCTTACCCAGACAGCGGCAGCA
GCAGATGCAGATTTGTACCAGCAGGAACAGCTGACTAGCTTGGCCACAGGCCAGACCATT
GCTTGTCTTGCCAAAGGGAATGACTAGATCCTGCTCTCTGGAGGTTGAAAACACACAGGC
TGAAACACCTCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               329-485, - strand, RNAz p=0.960475

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               329-485, - strand, RNAz p=0.960475

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               135-605, gnl|bosTau2|chr1 (77851830-77851364)
               

               
               135-605, gnl|Hg17|chr3 (141770505-141770969)
               

               
               135-605, gnl|Mm7|chr9 (97093412-97092954)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               135-605, gnl|bosTau2|chr1 (77851830-77851364)
               

               
               135-605, gnl|Hg17|chr3 (141770505-141770969)
               

               
               135-605, gnl|Mm7|chr9 (97093412-97092954)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	135-605, gnl\|bosTau2\|chr1 (77851830-77851364)
	135-605, gnl\|Hg17\|chr3 (141770505-141770969)
	135-605, gnl\|Mm7\|chr9 (97093412-97092954)