Non-Coding RNA Search

Ss1.1-recc2815c_o19.5

Sequence:


               
               CGGGCTGTGGGCTGCACTCGGCTGTCACCAGCCCCGCACGACTGCGGGTGCTGTGGCGCG
CCCTTTGCTCTGGGCCGGTGTGCGGGCGGCATGGGATAAGACGCCACCATGGTGCGCCGA
GATCGCCTCCGAAGGATGAGGGAGTGGTGGGTCCAGGTGGGGCTCCTGGCTGTGCCCCTG
CTGGCAGCCTATCTGCACATCCCGCCCCCCCAGCTTTCCCCCGCTCTTCACTCATGGAAA
TCATCAGGCAAATTTTTTACTTACAAGGGACTGCGCATCTTCTATCAAGACTCTGTGGGT
GTGGTGGGAAGTCCGGAGATAGTCGTGCTTTTACACGGCTTTCCAACGTCCAGCTATGAT
TGGTACAAGATCTGGGAAGGTCTGACCCTTAGGTTTCATCGAGTGATTGCCCTCGATTTC
CTAGGCTTCGGCTTCAGTGACAAACCGAGGCCGCATCACTATTCCATATTCGAGCAGGCC
AGCATCGTGGAGGCGCTTCTTCGGCATCTGGGGCTCCAGAACCGCAGGATCAACCTGTTG
TCTCACGACTACGGCGATATCGTTGCTCAGGAGCTGCTCTATAGGTTCAAGCAGAATCGA
TCTGGTCGGCTTACCATCAAGAGTCTCTGTCTGTCAAATGGAGGTATATTTCCTGAGACT
CACCGTCCCCTCCTTCTCCAAAAGCTTCTCAAAGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGCTGTGGGCTGCACTCGGCTGTCACCAGCCCCGCACGACTGCGGGTGCTGTGGCGCG
CCCTTTGCTCTGGGCCGGTGTGCGGGCGGCATGGGATAAGACGCCACCATGGTGCGCCGA
GATCGCCTCCGAAGGATGAGGGAGTGGTGGGTCCAGGTGGGGCTCCTGGCTGTGCCCCTG
CTGGCAGCCTATCTGCACATCCCGCCCCCCCAGCTTTCCCCCGCTCTTCACTCATGGAAA
TCATCAGGCAAATTTTTTACTTACAAGGGACTGCGCATCTTCTATCAAGACTCTGTGGGT
GTGGTGGGAAGTCCGGAGATAGTCGTGCTTTTACACGGCTTTCCAACGTCCAGCTATGAT
TGGTACAAGATCTGGGAAGGTCTGACCCTTAGGTTTCATCGAGTGATTGCCCTCGATTTC
CTAGGCTTCGGCTTCAGTGACAAACCGAGGCCGCATCACTATTCCATATTCGAGCAGGCC
AGCATCGTGGAGGCGCTTCTTCGGCATCTGGGGCTCCAGAACCGCAGGATCAACCTGTTG
TCTCACGACTACGGCGATATCGTTGCTCAGGAGCTGCTCTATAGGTTCAAGCAGAATCGA
TCTGGTCGGCTTACCATCAAGAGTCTCTGTCTGTCAAATGGAGGTATATTTCCTGAGACT
CACCGTCCCCTCCTTCTCCAAAAGCTTCTCAAAGAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|46397996|gb|AAS91745.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|46397996|gb|AAS91745.1|

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               2-199, gnl|bosTau2|chr4 (50885454-50885659)
               

               
               2-199, gnl|canFam2|chr14 (9401474-9401240)
               

               
               2-199, gnl|echTel1|scaffold_153344 (217-467)
               

               
               2-199, gnl|hg17|chr7 (129725877-129726126)
               

               
               2-199, gnl|Hg17|chr7 (129726000-129726176)
               

               
               2-199, gnl|loxAfr1|scaffold_1 (126745-126519)
               

               
               2-199, gnl|mm7|chr6 (30670198-30670476)
               

               
               2-199, gnl|oryCun1|scaffold_129777 (2862-3149)
               

               
               2-199, gnl|panTro1|chr6 (132198481-132198730)
               

               
               2-199, gnl|rheMac2|chr3 (167882883-167883131)
               


               
               201-691, gnl|bosTau2|chr20 (7294829-7294347)
               

               
               201-691, gnl|Hg17|chr3 (29103957-29104451)
               

               
               201-691, gnl|Mm7|chr6 (30672882-30677018)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-199, gnl|bosTau2|chr4 (50885454-50885659)
               

               
               2-199, gnl|canFam2|chr14 (9401474-9401240)
               

               
               2-199, gnl|echTel1|scaffold_153344 (217-467)
               

               
               2-199, gnl|hg17|chr7 (129725877-129726126)
               

               
               2-199, gnl|Hg17|chr7 (129726000-129726176)
               

               
               2-199, gnl|loxAfr1|scaffold_1 (126745-126519)
               

               
               2-199, gnl|mm7|chr6 (30670198-30670476)
               

               
               2-199, gnl|oryCun1|scaffold_129777 (2862-3149)
               

               
               2-199, gnl|panTro1|chr6 (132198481-132198730)
               

               
               2-199, gnl|rheMac2|chr3 (167882883-167883131)
               


               
               201-691, gnl|bosTau2|chr20 (7294829-7294347)
               

               
               201-691, gnl|Hg17|chr3 (29103957-29104451)
               

               
               201-691, gnl|Mm7|chr6 (30672882-30677018)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.23007)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.23007)

	2-199, gnl\|bosTau2\|chr4 (50885454-50885659)
	2-199, gnl\|canFam2\|chr14 (9401474-9401240)
	2-199, gnl\|echTel1\|scaffold_153344 (217-467)
	2-199, gnl\|hg17\|chr7 (129725877-129726126)
	2-199, gnl\|Hg17\|chr7 (129726000-129726176)
	2-199, gnl\|loxAfr1\|scaffold_1 (126745-126519)
	2-199, gnl\|mm7\|chr6 (30670198-30670476)
	2-199, gnl\|oryCun1\|scaffold_129777 (2862-3149)
	2-199, gnl\|panTro1\|chr6 (132198481-132198730)
	2-199, gnl\|rheMac2\|chr3 (167882883-167883131)

	201-691, gnl\|bosTau2\|chr20 (7294829-7294347)
	201-691, gnl\|Hg17\|chr3 (29103957-29104451)
	201-691, gnl\|Mm7\|chr6 (30672882-30677018)