Non-Coding RNA Search

Ss1.1-recc2816c_o21.5

Sequence:


               
               TGAGAGGAGCTAGCTGGATGCTGTGACAGCATCTGAAAGTGGGTCAGCACCTTCCTGTAA
ACTCTCGCCCTACTTCTAACTGCTCTATCAATATATACATATATTTATATCTATAAAGTG
ACTAGTTTAACTGGCATCCCGCTTGAGCCTGAGACTTGCCATAAAAAACTGCTGAGTACT
GGGCACACACTTTCATAGTTTGGTTCTCCATCTGTTGGGGGTAGGTGTTGAGCAAGGCAA
ATGTATCTTGATTTCAGATGGGCTTTCGATGCACTGTTGCCAAGGAAGGCTTTTTCTGAT
TTTTGGACAAACGAACTTTGGCACACTTTAATTGATGTCTTTCGGCAACTTAACGACACA
TTGAAAATTAGCTACTGTACATATTTTTATATTCTCTTTATAAATGCATGTCTGACTGTA
CTTGTAACCATATGGTAACGCGTGGCCGTCCAGCAGGCCTCGTGCTGCTGTGGCCCGTCG
GAGTAGCAGCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGAGGAGCTAGCTGGATGCTGTGACAGCATCTGAAAGTGGGTCAGCACCTTCCTGTAA
ACTCTCGCCCTACTTCTAACTGCTCTATCAATATATACATATATTTATATCTATAAAGTG
ACTAGTTTAACTGGCATCCCGCTTGAGCCTGAGACTTGCCATAAAAAACTGCTGAGTACT
GGGCACACACTTTCATAGTTTGGTTCTCCATCTGTTGGGGGTAGGTGTTGAGCAAGGCAA
ATGTATCTTGATTTCAGATGGGCTTTCGATGCACTGTTGCCAAGGAAGGCTTTTTCTGAT
TTTTGGACAAACGAACTTTGGCACACTTTAATTGATGTCTTTCGGCAACTTAACGACACA
TTGAAAATTAGCTACTGTACATATTTTTATATTCTCTTTATAAATGCATGTCTGACTGTA
CTTGTAACCATATGGTAACGCGTGGCCGTCCAGCAGGCCTCGTGCTGCTGTGGCCCGTCG
GAGTAGCAGCAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               75-182, - strand, RNAz p=0.570862

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               75-182, - strand, RNAz p=0.570862

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-489, gnl|bosTau2|chr10 (69304287-69303792)
               

               
               1-489, gnl|canFam2|chr8 (64447631-64448648)
               

               
               1-489, gnl|dasNov1|scaffold_43485 (6025-7052)
               

               
               1-489, gnl|echTel1|scaffold_184842 (6084-7125)
               

               
               1-489, gnl|hg17|chr14 (89942902-89943929)
               

               
               1-489, gnl|Hg17|chr14 (89943317-89943807)
               

               
               1-489, gnl|loxAfr1|scaffold_3280 (40686-39683)
               

               
               1-489, gnl|mm7|chr12 (97703740-97704743)
               

               
               1-489, gnl|Mm7|chr12 (97704140-97704622)
               

               
               1-489, gnl|monDom2|scaffold_8 (35053549-35052417)
               

               
               1-489, gnl|panTro1|chr15 (90210185-90211214)
               

               
               1-489, gnl|rheMac2|chr7 (153618385-153619414)
               

               
               1-489, gnl|rn3|chr6 (124490450-124491463)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-489, gnl|bosTau2|chr10 (69304287-69303792)
               

               
               1-489, gnl|canFam2|chr8 (64447631-64448648)
               

               
               1-489, gnl|dasNov1|scaffold_43485 (6025-7052)
               

               
               1-489, gnl|echTel1|scaffold_184842 (6084-7125)
               

               
               1-489, gnl|hg17|chr14 (89942902-89943929)
               

               
               1-489, gnl|Hg17|chr14 (89943317-89943807)
               

               
               1-489, gnl|loxAfr1|scaffold_3280 (40686-39683)
               

               
               1-489, gnl|mm7|chr12 (97703740-97704743)
               

               
               1-489, gnl|Mm7|chr12 (97704140-97704622)
               

               
               1-489, gnl|monDom2|scaffold_8 (35053549-35052417)
               

               
               1-489, gnl|panTro1|chr15 (90210185-90211214)
               

               
               1-489, gnl|rheMac2|chr7 (153618385-153619414)
               

               
               1-489, gnl|rn3|chr6 (124490450-124491463)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cbr (0.511902)
               

               
               fcc (0.197785)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.511902)
               

               
               fcc (0.197785)
               

               
               ecc (0.115035)

	1-489, gnl\|bosTau2\|chr10 (69304287-69303792)
	1-489, gnl\|canFam2\|chr8 (64447631-64448648)
	1-489, gnl\|dasNov1\|scaffold_43485 (6025-7052)
	1-489, gnl\|echTel1\|scaffold_184842 (6084-7125)
	1-489, gnl\|hg17\|chr14 (89942902-89943929)
	1-489, gnl\|Hg17\|chr14 (89943317-89943807)
	1-489, gnl\|loxAfr1\|scaffold_3280 (40686-39683)
	1-489, gnl\|mm7\|chr12 (97703740-97704743)
	1-489, gnl\|Mm7\|chr12 (97704140-97704622)
	1-489, gnl\|monDom2\|scaffold_8 (35053549-35052417)
	1-489, gnl\|panTro1\|chr15 (90210185-90211214)
	1-489, gnl\|rheMac2\|chr7 (153618385-153619414)
	1-489, gnl\|rn3\|chr6 (124490450-124491463)