Ss1.1-recc2816c_p5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCAGGGCCTGAGCCGCTGCCGCCGCCTCCGCTGCCGCGCAGCCCCACATCAACGCACTG GGGGCCCCGTCGCCACCGCTAGGGTCACCACCACATCACTGCAGGGCAAGATGGCATCTG CCACAGACTCGCGCTATGGGCAGAAGGAGTCCTCGGACCAGAACTTTGACTACATGTTTA AGATCCTCATCATTGGAAACAGCAGTGTGGGCAAGACATCCTTCCTCTTCCGCTATGCAG ACGACTCCTTCACGCCTGCCTTTGTCAGCACTGTAGGAATCGACTTCAAGGTCAAGACCA TCTACCGGAATGATAAGAGGATCAAGCTGCAGATCTGGGACACAGCGGGGCAAGAGCGGT ACCGGACCATCACGACAGCCTATTACCGGGGCGCCATGGGCTTCATCCTCATGTATGACA TCACCAATGAAGAGTCCTTCAATGCAGTGCAGGACTGGTCAACCCAGATCAAGACATACT CATGGGACAATGCCCAGGTGCTGCTGGTGGGGAACAAGTGTGACATGGAGGATGAGCGGG TGGTGTCATCAGAACGTGGCCGGCAGCTGGCTGACCACCTGGGGTTCGAGTTCTTTGAGG CAAGCGCCAAGGACAACATTAACGTCAAGCAGACCTTTGAGCGCCTGGTGGATGTCATCT GCGAGAAGATGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCAGGGCCTGAGCCGCTGCCGCCGCCTCCGCTGCCGCGCAGCCCCACATCAACGCACTG GGGGCCCCGTCGCCACCGCTAGGGTCACCACCACATCACTGCAGGGCAAGATGGCATCTG CCACAGACTCGCGCTATGGGCAGAAGGAGTCCTCGGACCAGAACTTTGACTACATGTTTA AGATCCTCATCATTGGAAACAGCAGTGTGGGCAAGACATCCTTCCTCTTCCGCTATGCAG ACGACTCCTTCACGCCTGCCTTTGTCAGCACTGTAGGAATCGACTTCAAGGTCAAGACCA TCTACCGGAATGATAAGAGGATCAAGCTGCAGATCTGGGACACAGCGGGGCAAGAGCGGT ACCGGACCATCACGACAGCCTATTACCGGGGCGCCATGGGCTTCATCCTCATGTATGACA TCACCAATGAAGAGTCCTTCAATGCAGTGCAGGACTGGTCAACCCAGATCAAGACATACT CATGGGACAATGCCCAGGTGCTGCTGGTGGGGAACAAGTGTGACATGGAGGATGAGCGGG TGGTGTCATCAGAACGTGGCCGGCAGCTGGCTGACCACCTGGGGTTCGAGTTCTTTGAGG CAAGCGCCAAGGACAACATTAACGTCAAGCAGACCTTTGAGCGCCTGGTGGATGTCATCT GCGAGAAGATGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 322-458, gnl|bosTau2|chr22 (47624655-47624519) | |
| 322-458, gnl|canFam2|chr20 (6011681-6011552) | |
| 322-458, gnl|danRer3|chr11 (1141444-1141583) | |
| 322-458, gnl|dasNov1|scaffold_110884 (2616-2755) | |
| 322-458, gnl|echTel1|scaffold_111597 (631-492) | |
| 322-458, gnl|fr1|chrUn (186973226-186973087) | |
| 322-458, gnl|galGal2|chr12 (5146583-5146722) | |
| 322-458, gnl|hg17|chr16 (45218068-45218207) | |
| 322-458, gnl|Hg17|chr3 (130296715-130296579) | |
| 322-458, gnl|loxAfr1|scaffold_22652 (52325-52184) | |
| 322-458, gnl|mm7|chr6 (87869707-87869846) | |
| 322-458, gnl|Mm7|chr6 (87869895-87869759) | |
| 322-458, gnl|monDom2|scaffold_5 (47880551-47880690) | |
| 322-458, gnl|oryCun1|scaffold_152198 (3777-3640) | |
| 322-458, gnl|panTro1|chr2 (132346612-132346728) | |
| 322-458, gnl|rheMac2|chr11 (85767366-85767324) | |
| 322-458, gnl|rn3|chr4 (122226802-122226941) | |
| 322-458, gnl|tetNig1|chr13 (6331557-6331696) | |
| 322-458, gnl|xenTro1|scaffold_835 (223381-223520) | |
| 571-672, gnl|bosTau2|chr7 (4235683-4235782) | |
| 571-672, gnl|canFam2|chr20 (47803414-47803195) | |
| 571-672, gnl|danRer3|chr2 (16704557-16704349) | |
| 571-672, gnl|dasNov1|scaffold_29114 (5466-5680) | |
| 571-672, gnl|echTel1|scaffold_294754 (563-347) | |
| 571-672, gnl|fr1|chrUn (302846503-302846719) | |
| 571-672, gnl|galGal2|chr8 (24445088-24445319) | |
| 571-672, gnl|hg17|chr19 (18169256-18169475) | |
| 571-672, gnl|Hg17|chr19 (18169480-18169381) | |
| 571-672, gnl|loxAfr1|scaffold_19916 (35080-35294) | |
| 571-672, gnl|mm7|chr8 (69212157-69211945) | |
| 571-672, gnl|Mm7|chr8 (69211938-69212037) | |
| 571-672, gnl|monDom2|scaffold_75 (327417-327637) | |
| 571-672, gnl|oryCun1|scaffold_144805 (6370-6158) | |
| 571-672, gnl|panTro1|chr20 (19163521-19163740) | |
| 571-672, gnl|rheMac2|chr19 (17781035-17781254) | |
| 571-672, gnl|rn3|chr16 (19190352-19190566) | |
| 571-672, gnl|tetNig1|chr15 (4029268-4029074) | |
| 571-672, gnl|xenTro1|scaffold_167 (1663823-1663584) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 322-458, gnl|bosTau2|chr22 (47624655-47624519) | |
| 322-458, gnl|canFam2|chr20 (6011681-6011552) | |
| 322-458, gnl|danRer3|chr11 (1141444-1141583) | |
| 322-458, gnl|dasNov1|scaffold_110884 (2616-2755) | |
| 322-458, gnl|echTel1|scaffold_111597 (631-492) | |
| 322-458, gnl|fr1|chrUn (186973226-186973087) | |
| 322-458, gnl|galGal2|chr12 (5146583-5146722) | |
| 322-458, gnl|hg17|chr16 (45218068-45218207) | |
| 322-458, gnl|Hg17|chr3 (130296715-130296579) | |
| 322-458, gnl|loxAfr1|scaffold_22652 (52325-52184) | |
| 322-458, gnl|mm7|chr6 (87869707-87869846) | |
| 322-458, gnl|Mm7|chr6 (87869895-87869759) | |
| 322-458, gnl|monDom2|scaffold_5 (47880551-47880690) | |
| 322-458, gnl|oryCun1|scaffold_152198 (3777-3640) | |
| 322-458, gnl|panTro1|chr2 (132346612-132346728) | |
| 322-458, gnl|rheMac2|chr11 (85767366-85767324) | |
| 322-458, gnl|rn3|chr4 (122226802-122226941) | |
| 322-458, gnl|tetNig1|chr13 (6331557-6331696) | |
| 322-458, gnl|xenTro1|scaffold_835 (223381-223520) | |
| 571-672, gnl|bosTau2|chr7 (4235683-4235782) | |
| 571-672, gnl|canFam2|chr20 (47803414-47803195) | |
| 571-672, gnl|danRer3|chr2 (16704557-16704349) | |
| 571-672, gnl|dasNov1|scaffold_29114 (5466-5680) | |
| 571-672, gnl|echTel1|scaffold_294754 (563-347) | |
| 571-672, gnl|fr1|chrUn (302846503-302846719) | |
| 571-672, gnl|galGal2|chr8 (24445088-24445319) | |
| 571-672, gnl|hg17|chr19 (18169256-18169475) | |
| 571-672, gnl|Hg17|chr19 (18169480-18169381) | |
| 571-672, gnl|loxAfr1|scaffold_19916 (35080-35294) | |
| 571-672, gnl|mm7|chr8 (69212157-69211945) | |
| 571-672, gnl|Mm7|chr8 (69211938-69212037) | |
| 571-672, gnl|monDom2|scaffold_75 (327417-327637) | |
| 571-672, gnl|oryCun1|scaffold_144805 (6370-6158) | |
| 571-672, gnl|panTro1|chr20 (19163521-19163740) | |
| 571-672, gnl|rheMac2|chr19 (17781035-17781254) | |
| 571-672, gnl|rn3|chr16 (19190352-19190566) | |
| 571-672, gnl|tetNig1|chr15 (4029268-4029074) | |
| 571-672, gnl|xenTro1|scaffold_167 (1663823-1663584) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cbr (0.767853) | |
| ecc (0.23007) | |
| nmm (0.132802) | |
| ebs (0.118301) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (0.767853) | |
| ecc (0.23007) | |
| nmm (0.132802) | |
| ebs (0.118301) |