Ss1.1-recc2817c_a7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCACTGTCCCTACAGCACTGCCCAGAAGGCGGTGGGCAAGGACAACTTCACTCTGATCCC CGAGGGCGTCAACGGGATAGAGGAGCGGATGACCGTGGTCTGGGACAAAGCGGTGGCTAC TGGCAAAATGGATGAGAACCAGTTTGTCGCTGTGACCAGCACCAATGCAGCCAAGATCTT CAACCTGTACCCCAGGAAAGGGCGGATTGCCGTGGGCTCGGACGCCGACGTGGTCATCTG GGACCCTGACAAGGTGAAGACCATCACGGCCAAGAGCCACAAGTCGGCCGTGGAGTACAA CATCTTCGAAGGCATGGAGTGCCACGGCTCCCCGCTGGCGGTCATCAGCCAGGGCAAGAT CGTCTTTGAGGACGGCAACATCAACGTCAGCAAGGGCATGGGCCGCTTCATCCCGCGCAA GCCCTTCCCCGAGTATCTCTACCAGCGCGTCAGGATCCGGAACAAGGTTTCTGGGTTGCA AGGTGTCCCCAGGGGCATGTATGATGGTCCTGTGTATGAGGTGCCAGCCACCCCCAAATA TGCAACGCCCGCTCCTTCTGCCAAATCCTCGCCTTCCAAACACCAGCCTCCACCCATCAG GAACCTCCACCAGTCCAACTTCAGTTTATCAGGTGCCCAGATAGACGACAACAACCCCCG GCGCACGGGCCACCGCATCGTGGCGCCCCCTGGTGGCCGCTCCAACATCACCAGCCTCGG GTGAAGGGGCCGGAGGAGGAGCGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCACTGTCCCTACAGCACTGCCCAGAAGGCGGTGGGCAAGGACAACTTCACTCTGATCCC CGAGGGCGTCAACGGGATAGAGGAGCGGATGACCGTGGTCTGGGACAAAGCGGTGGCTAC TGGCAAAATGGATGAGAACCAGTTTGTCGCTGTGACCAGCACCAATGCAGCCAAGATCTT CAACCTGTACCCCAGGAAAGGGCGGATTGCCGTGGGCTCGGACGCCGACGTGGTCATCTG GGACCCTGACAAGGTGAAGACCATCACGGCCAAGAGCCACAAGTCGGCCGTGGAGTACAA CATCTTCGAAGGCATGGAGTGCCACGGCTCCCCGCTGGCGGTCATCAGCCAGGGCAAGAT CGTCTTTGAGGACGGCAACATCAACGTCAGCAAGGGCATGGGCCGCTTCATCCCGCGCAA GCCCTTCCCCGAGTATCTCTACCAGCGCGTCAGGATCCGGAACAAGGTTTCTGGGTTGCA AGGTGTCCCCAGGGGCATGTATGATGGTCCTGTGTATGAGGTGCCAGCCACCCCCAAATA TGCAACGCCCGCTCCTTCTGCCAAATCCTCGCCTTCCAAACACCAGCCTCCACCCATCAG GAACCTCCACCAGTCCAACTTCAGTTTATCAGGTGCCCAGATAGACGACAACAACCCCCG GCGCACGGGCCACCGCATCGTGGCGCCCCCTGGTGGCCGCTCCAACATCACCAGCCTCGG GTGAAGGGGCCGGAGGAGGAGCGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-116, + strand, RNAz p=0.694564 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-116, + strand, RNAz p=0.694564 |
| Aligned organism(s): 76 entry(ies) | More info |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
| 1-116, gnl|bosTau2|chr6 (60571334-60571449) | |
| 1-116, gnl|canFam2|chr3 (73847416-73847577) | |
| 1-116, gnl|danRer3|chr21 (39899640-39899480) | |
| 1-116, gnl|dasNov1|scaffold_84392 (444-283) | |
| 1-116, gnl|echTel1|scaffold_305710 (962-802) | |
| 1-116, gnl|fr1|chrUn (144423792-144423940) | |
| 1-116, gnl|galGal2|chr4 (79530660-79530820) | |
| 1-116, gnl|hg17|chr4 (5956560-5956721) | |
| 1-116, gnl|Hg17|chr4 (5956678-5956563) | |
| 1-116, gnl|loxAfr1|scaffold_682 (85254-85415) | |
| 1-116, gnl|mm7|chr5 (36364393-36364235) | |
| 1-116, gnl|Mm7|chr5 (36364273-36364388) | |
| 1-116, gnl|monDom2|scaffold_10 (33292565-33292726) | |
| 1-116, gnl|oryCun1|scaffold_127522 (1258-1417) | |
| 1-116, gnl|panTro1|chr3 (6016956-6017117) | |
| 1-116, gnl|rheMac2|chr5 (2969994-2969833) | |
| 1-116, gnl|rn3|chr14 (79088001-79088159) | |
| 1-116, gnl|tetNig1|chr18 (249969-249820) | |
| 1-116, gnl|xenTro1|scaffold_119 (998054-998215) | |
| 119-282, gnl|bosTau2|chr8 (39496112-39495949) | |
| 119-282, gnl|canFam2|chr25 (33901817-33901624) | |
| 119-282, gnl|danRer3|chr10 (8348514-8348321) | |
| 119-282, gnl|dasNov1|scaffold_149922 (4153-3960) | |
| 119-282, gnl|echTel1|scaffold_305710 (3080-3264) | |
| 119-282, gnl|fr1|chrUn (278621911-278621719) | |
| 119-282, gnl|galGal2|chr22 (460504-460319) | |
| 119-282, gnl|hg17|chr8 (26561054-26561247) | |
| 119-282, gnl|Hg17|chr8 (26561066-26561229) | |
| 119-282, gnl|loxAfr1|scaffold_1596 (65056-65248) | |
| 119-282, gnl|mm7|chr14 (61674195-61674005) | |
| 119-282, gnl|Mm7|chr14 (61674181-61674018) | |
| 119-282, gnl|monDom2|scaffold_61 (6023728-6023535) | |
| 119-282, gnl|oryCun1|scaffold_207423 (34242-34049) | |
| 119-282, gnl|panTro1|chr7 (27534524-27534717) | |
| 119-282, gnl|rheMac2|chr8 (26795262-26795455) | |
| 119-282, gnl|rn3|chr15 (46372080-46371890) | |
| 119-282, gnl|tetNig1|chr4 (5983243-5983069) | |
| 119-282, gnl|xenTro1|scaffold_608 (587252-587441) | |
| 286-468, gnl|bosTau2|chr6 (60576977-60577159) | |
| 286-468, gnl|canFam2|chr25 (33896667-33896548) | |
| 286-468, gnl|canFam2|chr3 (73842805-73842994) | |
| 286-468, gnl|danRer3|chr10 (8342926-8342811) | |
| 286-468, gnl|danRer3|chr21 (39907356-39907169) | |
| 286-468, gnl|dasNov1|scaffold_35142 (45261-45142) | |
| 286-468, gnl|dasNov1|scaffold_84392 (5388-5199) | |
| 286-468, gnl|echTel1|scaffold_305710 (9542-9661) | |
| 286-468, gnl|echTel1|scaffold_305710 (9655-9467) | |
| 286-468, gnl|fr1|chrUn (278621568-278621453) | |
| 286-468, gnl|fr1|chrUn (144421009-144421197) | |
| 286-468, gnl|galGal2|chr22 (457731-457616) | |
| 286-468, gnl|galGal2|chr4 (79527589-79527775) | |
| 286-468, gnl|hg17|chr4 (5948285-5948474) | |
| 286-468, gnl|Hg17|chr4 (5948468-5948286) | |
| 286-468, gnl|hg17|chr8 (26565761-26565880) | |
| 286-468, gnl|loxAfr1|scaffold_135816 (529-718) | |
| 286-468, gnl|loxAfr1|scaffold_1596 (70115-70234) | |
| 286-468, gnl|mm7|chr14 (61668860-61668741) | |
| 286-468, gnl|mm7|chr5 (36367945-36367753) | |
| 286-468, gnl|Mm7|chr5 (36367761-36367943) | |
| 286-468, gnl|monDom2|scaffold_10 (33287248-33287437) | |
| 286-468, gnl|monDom2|scaffold_61 (6012765-6012646) | |
| 286-468, gnl|oryCun1|scaffold_186982 (3735-3627) | |
| 286-468, gnl|oryCun1|scaffold_26763 (982-1159) | |
| 286-468, gnl|panTro1|chr3 (6009218-6009407) | |
| 286-468, gnl|panTro1|chr7 (27539219-27539338) | |
| 286-468, gnl|rheMac2|chr5 (2978232-2978043) | |
| 286-468, gnl|rheMac2|chr8 (26800082-26800201) | |
| 286-468, gnl|rn3|chr14 (79084178-79084370) | |
| 286-468, gnl|rn3|chr15 (46367284-46367165) | |
| 286-468, gnl|tetNig1|chr18 (251580-251395) | |
| 286-468, gnl|tetNig1|chr4 (5981944-5981833) | |
| 286-468, gnl|xenTro1|scaffold_119 (997194-997380) | |
| 286-468, gnl|xenTro1|scaffold_608 (587588-587702) | |
| 630-742, gnl|bosTau2|chr6 (60580499-60580612) | |
| 630-742, gnl|Hg17|chr4 (5941653-5941539) | |
| 630-742, gnl|Mm7|chr5 (36372509-36372623) |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-116, gnl|bosTau2|chr6 (60571334-60571449) | |
| 1-116, gnl|canFam2|chr3 (73847416-73847577) | |
| 1-116, gnl|danRer3|chr21 (39899640-39899480) | |
| 1-116, gnl|dasNov1|scaffold_84392 (444-283) | |
| 1-116, gnl|echTel1|scaffold_305710 (962-802) | |
| 1-116, gnl|fr1|chrUn (144423792-144423940) | |
| 1-116, gnl|galGal2|chr4 (79530660-79530820) | |
| 1-116, gnl|hg17|chr4 (5956560-5956721) | |
| 1-116, gnl|Hg17|chr4 (5956678-5956563) | |
| 1-116, gnl|loxAfr1|scaffold_682 (85254-85415) | |
| 1-116, gnl|mm7|chr5 (36364393-36364235) | |
| 1-116, gnl|Mm7|chr5 (36364273-36364388) | |
| 1-116, gnl|monDom2|scaffold_10 (33292565-33292726) | |
| 1-116, gnl|oryCun1|scaffold_127522 (1258-1417) | |
| 1-116, gnl|panTro1|chr3 (6016956-6017117) | |
| 1-116, gnl|rheMac2|chr5 (2969994-2969833) | |
| 1-116, gnl|rn3|chr14 (79088001-79088159) | |
| 1-116, gnl|tetNig1|chr18 (249969-249820) | |
| 1-116, gnl|xenTro1|scaffold_119 (998054-998215) | |
| 119-282, gnl|bosTau2|chr8 (39496112-39495949) | |
| 119-282, gnl|canFam2|chr25 (33901817-33901624) | |
| 119-282, gnl|danRer3|chr10 (8348514-8348321) | |
| 119-282, gnl|dasNov1|scaffold_149922 (4153-3960) | |
| 119-282, gnl|echTel1|scaffold_305710 (3080-3264) | |
| 119-282, gnl|fr1|chrUn (278621911-278621719) | |
| 119-282, gnl|galGal2|chr22 (460504-460319) | |
| 119-282, gnl|hg17|chr8 (26561054-26561247) | |
| 119-282, gnl|Hg17|chr8 (26561066-26561229) | |
| 119-282, gnl|loxAfr1|scaffold_1596 (65056-65248) | |
| 119-282, gnl|mm7|chr14 (61674195-61674005) | |
| 119-282, gnl|Mm7|chr14 (61674181-61674018) | |
| 119-282, gnl|monDom2|scaffold_61 (6023728-6023535) | |
| 119-282, gnl|oryCun1|scaffold_207423 (34242-34049) | |
| 119-282, gnl|panTro1|chr7 (27534524-27534717) | |
| 119-282, gnl|rheMac2|chr8 (26795262-26795455) | |
| 119-282, gnl|rn3|chr15 (46372080-46371890) | |
| 119-282, gnl|tetNig1|chr4 (5983243-5983069) | |
| 119-282, gnl|xenTro1|scaffold_608 (587252-587441) | |
| 286-468, gnl|bosTau2|chr6 (60576977-60577159) | |
| 286-468, gnl|canFam2|chr25 (33896667-33896548) | |
| 286-468, gnl|canFam2|chr3 (73842805-73842994) | |
| 286-468, gnl|danRer3|chr10 (8342926-8342811) | |
| 286-468, gnl|danRer3|chr21 (39907356-39907169) | |
| 286-468, gnl|dasNov1|scaffold_35142 (45261-45142) | |
| 286-468, gnl|dasNov1|scaffold_84392 (5388-5199) | |
| 286-468, gnl|echTel1|scaffold_305710 (9542-9661) | |
| 286-468, gnl|echTel1|scaffold_305710 (9655-9467) | |
| 286-468, gnl|fr1|chrUn (278621568-278621453) | |
| 286-468, gnl|fr1|chrUn (144421009-144421197) | |
| 286-468, gnl|galGal2|chr22 (457731-457616) | |
| 286-468, gnl|galGal2|chr4 (79527589-79527775) | |
| 286-468, gnl|hg17|chr4 (5948285-5948474) | |
| 286-468, gnl|Hg17|chr4 (5948468-5948286) | |
| 286-468, gnl|hg17|chr8 (26565761-26565880) | |
| 286-468, gnl|loxAfr1|scaffold_135816 (529-718) | |
| 286-468, gnl|loxAfr1|scaffold_1596 (70115-70234) | |
| 286-468, gnl|mm7|chr14 (61668860-61668741) | |
| 286-468, gnl|mm7|chr5 (36367945-36367753) | |
| 286-468, gnl|Mm7|chr5 (36367761-36367943) | |
| 286-468, gnl|monDom2|scaffold_10 (33287248-33287437) | |
| 286-468, gnl|monDom2|scaffold_61 (6012765-6012646) | |
| 286-468, gnl|oryCun1|scaffold_186982 (3735-3627) | |
| 286-468, gnl|oryCun1|scaffold_26763 (982-1159) | |
| 286-468, gnl|panTro1|chr3 (6009218-6009407) | |
| 286-468, gnl|panTro1|chr7 (27539219-27539338) | |
| 286-468, gnl|rheMac2|chr5 (2978232-2978043) | |
| 286-468, gnl|rheMac2|chr8 (26800082-26800201) | |
| 286-468, gnl|rn3|chr14 (79084178-79084370) | |
| 286-468, gnl|rn3|chr15 (46367284-46367165) | |
| 286-468, gnl|tetNig1|chr18 (251580-251395) | |
| 286-468, gnl|tetNig1|chr4 (5981944-5981833) | |
| 286-468, gnl|xenTro1|scaffold_119 (997194-997380) | |
| 286-468, gnl|xenTro1|scaffold_608 (587588-587702) | |
| 630-742, gnl|bosTau2|chr6 (60580499-60580612) | |
| 630-742, gnl|Hg17|chr4 (5941653-5941539) | |
| 630-742, gnl|Mm7|chr5 (36372509-36372623) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| ecc (0.23007) | |
| fcc (0.197785) | |
| hyp (0.142837) | |
| ese (0.126502) | |
| ebs (0.118301) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.23007) | |
| fcc (0.197785) | |
| hyp (0.142837) | |
| ese (0.126502) | |
| ebs (0.118301) |