Non-Coding RNA Search

Ss1.1-recc2817c_e3.5

Sequence:


               
               AGACACAAAACCAACTGCTGGGCAGGTGCTCCTGAAAGGGAGCAGCGGAGGGGACCCCCT
GGGCTTCCTGGGGTACTGTCCCCAGGAGGACGCGCTGTGGCCCAGCCTGACGGTGAAGGA
GCATCTGGAGGTGTTCGCCGCCGTGAAGGGGCTGAGGAAAGCGGACGCTGCCGCGGCCAT
CGCGCGGTTGGTGGATGCGCTCAAGCTGCAGGACCAGCTGAAGCTCCCCACGAAGGCCTT
GTCCGAGGGAATAAAGAGGAAGCTGTGCTTCGCGCTGAGCATCCTGGGCCTTCGTGCTGT
GGTGCTTCTGGACGAGCCGTCCACGGGGATGGACCCAACATTCTCTTGGCAGATGTGGCA
GGCGATCCGGGCCACCTTCAAAAACACGGAGAGGGGCGCCCTCCTGACCACGCACTACAT
GGCCGAGGCCGAGGCCGTGTGTGACCGCGTGGCCATCATGGTGTCCGGAAGGCTGAGATG
TATTGGGGCCATCCAGCACCTAAAGAACAAGTTTGGCAAGGACTACCTGCTGGAGATGAA
AGTGAAGACCCCCACACAGGAAGAGACTCTCCACAGCGAAATTCTCAGGCTTTTCCCCCA
GGCCGCACGGCAGGAAAGGTTCTCGTCTCTGATGGTCTACAAGTTGCCAGTGGAAGATGT
GCGACCTTTAGCCCAGGCTTTCTTCAAATTAGAGAATGTTAAGCAGCGCTTCGACCTGGA
GGAGTACAGCCTCTCACAGTCCACCCTGGAGCAGGTTTTCCTGGAGCTTTCCAAGGAGCA
GGAGCTGGATGACTTAAAAGAGGAACTTCACCCCTCAGTGAAGTGGAAGCTCCTTCCTCA
GGAAGAGCCGTGAAGCCCCAAATAACCTACATTCCGATGCACGCTTGTCATTTTTCAAGA
CGTTTGTTTTTATAGCATCGATGTCATATCGTTAAAGAGTATATTGTTAACACTGGTGTG
GCTCTCAGCTTGGTGGAGAGGAGGCGCGAGTGTTGGGCAGGTGCAGTGACAATGTGGATA
GAGGCACGTGGCTGAGCCCATGTCCCAGGCACAGCCTCTGTGTCTCTGCAGGGCATCCTG
ATTCCATTTTTCTCTATAATACTGAATAAAAGTACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACACAAAACCAACTGCTGGGCAGGTGCTCCTGAAAGGGAGCAGCGGAGGGGACCCCCT
GGGCTTCCTGGGGTACTGTCCCCAGGAGGACGCGCTGTGGCCCAGCCTGACGGTGAAGGA
GCATCTGGAGGTGTTCGCCGCCGTGAAGGGGCTGAGGAAAGCGGACGCTGCCGCGGCCAT
CGCGCGGTTGGTGGATGCGCTCAAGCTGCAGGACCAGCTGAAGCTCCCCACGAAGGCCTT
GTCCGAGGGAATAAAGAGGAAGCTGTGCTTCGCGCTGAGCATCCTGGGCCTTCGTGCTGT
GGTGCTTCTGGACGAGCCGTCCACGGGGATGGACCCAACATTCTCTTGGCAGATGTGGCA
GGCGATCCGGGCCACCTTCAAAAACACGGAGAGGGGCGCCCTCCTGACCACGCACTACAT
GGCCGAGGCCGAGGCCGTGTGTGACCGCGTGGCCATCATGGTGTCCGGAAGGCTGAGATG
TATTGGGGCCATCCAGCACCTAAAGAACAAGTTTGGCAAGGACTACCTGCTGGAGATGAA
AGTGAAGACCCCCACACAGGAAGAGACTCTCCACAGCGAAATTCTCAGGCTTTTCCCCCA
GGCCGCACGGCAGGAAAGGTTCTCGTCTCTGATGGTCTACAAGTTGCCAGTGGAAGATGT
GCGACCTTTAGCCCAGGCTTTCTTCAAATTAGAGAATGTTAAGCAGCGCTTCGACCTGGA
GGAGTACAGCCTCTCACAGTCCACCCTGGAGCAGGTTTTCCTGGAGCTTTCCAAGGAGCA
GGAGCTGGATGACTTAAAAGAGGAACTTCACCCCTCAGTGAAGTGGAAGCTCCTTCCTCA
GGAAGAGCCGTGAAGCCCCAAATAACCTACATTCCGATGCACGCTTGTCATTTTTCAAGA
CGTTTGTTTTTATAGCATCGATGTCATATCGTTAAAGAGTATATTGTTAACACTGGTGTG
GCTCTCAGCTTGGTGGAGAGGAGGCGCGAGTGTTGGGCAGGTGCAGTGACAATGTGGATA
GAGGCACGTGGCTGAGCCCATGTCCCAGGCACAGCCTCTGTGTCTCTGCAGGGCATCCTG
ATTCCATTTTTCTCTATAATACTGAATAAAAGTACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|30802206|gb|AAH51320.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|30802206|gb|AAH51320.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               23-141, + strand, RNAz p=0.838097
               

               
               752-866, + strand, RNAz p=0.985456

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               23-141, + strand, RNAz p=0.838097
               

               
               752-866, + strand, RNAz p=0.985456

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_007168, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_007168, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               23-209, gnl|bosTau2|chr19 (56062932-56063118)
               

               
               23-209, gnl|Hg17|chr17 (64494063-64493876)
               

               
               23-209, gnl|Mm7|chr11 (110219491-110219305)
               


               
               357-480, gnl|bosTau2|chr19 (56065373-56065496)
               

               
               357-480, gnl|Hg17|chr17 (64491912-64491789)
               

               
               357-480, gnl|Mm7|chr11 (110216626-110216503)
               


               
               752-1110, gnl|bosTau2|chr19 (56077020-56077366)
               

               
               752-1110, gnl|Hg17|chr17 (64375922-64375562)
               

               
               752-1110, gnl|Mm7|chr11 (110043655-110043325)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-209, gnl|bosTau2|chr19 (56062932-56063118)
               

               
               23-209, gnl|Hg17|chr17 (64494063-64493876)
               

               
               23-209, gnl|Mm7|chr11 (110219491-110219305)
               


               
               357-480, gnl|bosTau2|chr19 (56065373-56065496)
               

               
               357-480, gnl|Hg17|chr17 (64491912-64491789)
               

               
               357-480, gnl|Mm7|chr11 (110216626-110216503)
               


               
               752-1110, gnl|bosTau2|chr19 (56077020-56077366)
               

               
               752-1110, gnl|Hg17|chr17 (64375922-64375562)
               

               
               752-1110, gnl|Mm7|chr11 (110043655-110043325)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               che (0.136314)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)
               

               
               ecc (0.115035)

	23-141, + strand, RNAz p=0.838097
	752-866, + strand, RNAz p=0.985456

	23-209, gnl\|bosTau2\|chr19 (56062932-56063118)
	23-209, gnl\|Hg17\|chr17 (64494063-64493876)
	23-209, gnl\|Mm7\|chr11 (110219491-110219305)

	357-480, gnl\|bosTau2\|chr19 (56065373-56065496)
	357-480, gnl\|Hg17\|chr17 (64491912-64491789)
	357-480, gnl\|Mm7\|chr11 (110216626-110216503)

	752-1110, gnl\|bosTau2\|chr19 (56077020-56077366)
	752-1110, gnl\|Hg17\|chr17 (64375922-64375562)
	752-1110, gnl\|Mm7\|chr11 (110043655-110043325)