Non-Coding RNA Search

Ss1.1-recc2817c_f2.5

Sequence:


               
               GGCGCTGAGGACACTCGGCGTCTGAGATTTGTTCAAGGTCTCGATTTGGTTCCCTGAAGC
AGAAACGGGCGTATGCTGCGAGCAGATGCCTGGTAGTAACTTCTAGAACGTCTGGGTCTC
TCTCGTTCTGTTGTTCCGAGACCCGATGGGCGAGTTTAGTGCCAGACTGGGCTGGCGGTG
TCACCTTCGTTCCGCTCTGTCCGCCCCACACCTGGCTGGATCGGAAGGGGCAGAGTTGGG
CTCTCTTGGGCCACCGCCCGCTTCACCAGCTGACCCATATTTGGCTGGAGGGGCAATGGG
GAGACGGCCAGGAGAGAGCAGGACCAGTAGCCGGTCTGAGCTGCAGTGGGGCGGGCTGTC
CTGCTCTTTGCATGGCTGGGAAGCGCCAGAAGTGGCGGTCGGAGCGGTTGCCATCTTTGC
TCTGTGCGCTGCTGTCCCCTTTGGAAAGTGCAGGTGTGCGCTTGCTCCTTGTCGAGAGCA
GCTTGAACGGGCAGGTGGCCTGCGGCGCCACGTGGTGGGCTTGGCGGCACCTGTCCTGAG
TATCTGCGAGGGAGGCTGCTTCCTGTGGAATTTCTTTTCTACTTTTCTATTCTTAGTACT
GTATGGATGTTGCCGAGCACCACGCGTGATGCTTCTGTGCTGCTTGCATCTTTAATAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGCTGAGGACACTCGGCGTCTGAGATTTGTTCAAGGTCTCGATTTGGTTCCCTGAAGC
AGAAACGGGCGTATGCTGCGAGCAGATGCCTGGTAGTAACTTCTAGAACGTCTGGGTCTC
TCTCGTTCTGTTGTTCCGAGACCCGATGGGCGAGTTTAGTGCCAGACTGGGCTGGCGGTG
TCACCTTCGTTCCGCTCTGTCCGCCCCACACCTGGCTGGATCGGAAGGGGCAGAGTTGGG
CTCTCTTGGGCCACCGCCCGCTTCACCAGCTGACCCATATTTGGCTGGAGGGGCAATGGG
GAGACGGCCAGGAGAGAGCAGGACCAGTAGCCGGTCTGAGCTGCAGTGGGGCGGGCTGTC
CTGCTCTTTGCATGGCTGGGAAGCGCCAGAAGTGGCGGTCGGAGCGGTTGCCATCTTTGC
TCTGTGCGCTGCTGTCCCCTTTGGAAAGTGCAGGTGTGCGCTTGCTCCTTGTCGAGAGCA
GCTTGAACGGGCAGGTGGCCTGCGGCGCCACGTGGTGGGCTTGGCGGCACCTGTCCTGAG
TATCTGCGAGGGAGGCTGCTTCCTGTGGAATTTCTTTTCTACTTTTCTATTCTTAGTACT
GTATGGATGTTGCCGAGCACCACGCGTGATGCTTCTGTGCTGCTTGCATCTTTAATAAAG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               474-660, gnl|bosTau2|chr5 (72271060-72271252)
               

               
               474-660, gnl|Hg17|chr22 (42545490-42545303)
               

               
               474-660, gnl|Mm7|chr15 (84158619-84158432)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               474-660, gnl|bosTau2|chr5 (72271060-72271252)
               

               
               474-660, gnl|Hg17|chr22 (42545490-42545303)
               

               
               474-660, gnl|Mm7|chr15 (84158619-84158432)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hyp (0.142837)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               ecc (0.115035)

	474-660, gnl\|bosTau2\|chr5 (72271060-72271252)
	474-660, gnl\|Hg17\|chr22 (42545490-42545303)
	474-660, gnl\|Mm7\|chr15 (84158619-84158432)