Non-Coding RNA Search

Ss1.1-recc2817c_f21.5

Sequence:


               
               AAAGAATGAATTTATCATTCTGAAATAATCCAGACATGGCATCATAAATCAATACAACTA
TGAAAGCATAAAACAATCTCTTGTTCCTCACTACTAGCAAGAAAAAAATCCAGCGAATTT
ATTTTTTCTCTCCTAAACATGATTGATGTGAGTTCGTTGTAAACACATGATGTCACGGGG
AGAATTTTACTGAGCGTCCCCTCCAGCGTCTGCAGACCCCACTCGCAATGGACCCCCCTC
CTCTCCACATTCAGATCATGAGACTGAGCTTCCCTGATGTATCTGCCACGTGACCCCAAA
TCACCAAAGTTACTCCTCATGGCATTTGCATGAGTTACTTTTTGTTTTGACTTAGATTAG
CTCTTCATTGTTAAAATGTAGAAGTCAATGATGTAGCTGTTTTACCCAAACAGCATCTCC
TACACAAAGTCACAGGCATATTTAAAGGATTAGTTGAGGCAGTGTGCTTTTTAGATTTTG
TTTTGTTTTGTTTTGTTTCTGTATTACGTCTCTTTCTCTTTCCTTCTTCCCGCCTCAGGC
ACCTACCTTACTCCTTCTAAAGCACTTTATATCTCTCTTGAAATACACAGAAGTTTTGAA
AAACTGTCTTTAAAGGGATTTGTCTTCTATTAGGAGACACGACTTTTATTTTGCTTTATT
CTATTCTCTATGTGCTTGGAGAGCATACTCTGTTTGTCTCATACAGGCTAGTGACGAAAT
ATTAAGGATAATAGTTGGAAACATTTGGTGGTACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGAATGAATTTATCATTCTGAAATAATCCAGACATGGCATCATAAATCAATACAACTA
TGAAAGCATAAAACAATCTCTTGTTCCTCACTACTAGCAAGAAAAAAATCCAGCGAATTT
ATTTTTTCTCTCCTAAACATGATTGATGTGAGTTCGTTGTAAACACATGATGTCACGGGG
AGAATTTTACTGAGCGTCCCCTCCAGCGTCTGCAGACCCCACTCGCAATGGACCCCCCTC
CTCTCCACATTCAGATCATGAGACTGAGCTTCCCTGATGTATCTGCCACGTGACCCCAAA
TCACCAAAGTTACTCCTCATGGCATTTGCATGAGTTACTTTTTGTTTTGACTTAGATTAG
CTCTTCATTGTTAAAATGTAGAAGTCAATGATGTAGCTGTTTTACCCAAACAGCATCTCC
TACACAAAGTCACAGGCATATTTAAAGGATTAGTTGAGGCAGTGTGCTTTTTAGATTTTG
TTTTGTTTTGTTTTGTTTCTGTATTACGTCTCTTTCTCTTTCCTTCTTCCCGCCTCAGGC
ACCTACCTTACTCCTTCTAAAGCACTTTATATCTCTCTTGAAATACACAGAAGTTTTGAA
AAACTGTCTTTAAAGGGATTTGTCTTCTATTAGGAGACACGACTTTTATTTTGCTTTATT
CTATTCTCTATGTGCTTGGAGAGCATACTCTGTTTGTCTCATACAGGCTAGTGACGAAAT
ATTAAGGATAATAGTTGGAAACATTTGGTGGTACAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               490-603, - strand, RNAz p=0.91355

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               490-603, - strand, RNAz p=0.91355

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               42-745, gnl|bosTau2|chr17 (10777741-10777032)
               

               
               42-745, gnl|Hg17|chr4 (142139481-142138751)
               

               
               42-745, gnl|Mm7|chr8 (81653844-81654572)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               42-745, gnl|bosTau2|chr17 (10777741-10777032)
               

               
               42-745, gnl|Hg17|chr4 (142139481-142138751)
               

               
               42-745, gnl|Mm7|chr8 (81653844-81654572)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               hea (0.408998)
               

               
               ece (0.229305)
               

               
               aor (0.195274)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.408998)
               

               
               ece (0.229305)
               

               
               aor (0.195274)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	42-745, gnl\|bosTau2\|chr17 (10777741-10777032)
	42-745, gnl\|Hg17\|chr4 (142139481-142138751)
	42-745, gnl\|Mm7\|chr8 (81653844-81654572)

	hea (0.408998)
	ece (0.229305)
	aor (0.195274)
	tbr (0.154178)
	fat (0.147427)
	lin (0.145603)
	sug (0.127291)
	ecc (0.115035)
	jca (0.11396)
	cty (0.10408)