Ss1.1-recc2817c_k11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGAGAGTCATGGTGCGCTGCAGTTGCATGTTGTTTAGAAAGTATGGAAACTTCATTGAT AACCTGAGACTCTTCACCAAGGGAGGAAGTGGTGGAATGGGCTACCCTCGCTTAGGTGGA GAAGGTGGAAAAGGGGGTGACGTCTGGGTTGTAGCCCATAACAAAATGACTTTAAAACAA CTTAAAGACAAATATCCTCAGAAACGGTTTGTGGCTGGAGAAGGAGCAAATAGTCGAGTT AGTGCACTGAAAGGCTCCAAAGGAAAAGACTGTGAAATTCCTGTACCTGTGGGTATTTCA GTAACTGATGAAAATGGTAAAATCATAGGAGAACTCAATAAAGAGAAAGACAGAATTTTG GTAGCTGAAGGAGGTATTGGTGGTAAATTGCTTACAAATTTCTTACCATTGAAAGGCCAG AGAAGAGTAATTCACCTAGATCTAAAACTTATAGCTGATGTAGGCCTAGTGGGATTCCCA AATGCTGGAAAATCCTCTTTGCTAAGTAAGATTTCTCATGCAAAACCTGCAATTGCAGAT TATGCATTTACAACATTAAAGCCTGAACTTGGAAAAATTATGTATAATGATTTCAAACAG ATCTCAGTAGCTGATCTTCCTGGTTTGATAGAAGGAGCACATATGAACAAAGGAATGGGC CACAAATTCCTCAAGCATATAGAAAGAACTAAACAACTACTTTTTGTTGTCGATATTTCT GGATTTCAGCTTTCTTCACAAACTCGGTATAGAACTGCCTTTGAAACCATAATACTACTT ACAAAAGAGTTGGAGTTGTACAAAGAGGAACTTCAGACAAAACCTGCTCTCCTGGCAGTT AATAAAATGGACTTGCCAGATGCCCAAGATAAGTTTCAGGTACTGATGAACCAACTCCAA AGTCCTAAAGATTTTTTACATTTATTTGAAAAAAACATGATTCCAGAGAGGACTGTGGAG TTCCAACACATCATCCCCATCTCTGCAGTTACTGGAGAAGGAATAGATGAACTAAAGACC TTCATAAGGAAATCACTGGATGAACATGCCAACCAGGAAAATGATGCATGTCATAAGAAG CAGTTGCTTAATTTACGTATTTCTAACACAATATCTTATAGTGAGCCACCATCAAATACC GCTGTTACTAGTCCCAGAATGGATATAACTTAAATTAAAAGTGGTGTTGAAACTGTGTTC ATTTGAAAGCTTTTCCACACATATTTTTTAGAAGTTTAGTTGTTTCTACATGATGGTGTC TGTGCCATCATTTAAGAACCATACTTTTAAAAGATGTTTTATAGCTAAATCCATCAACAG TGAAAAAGTAACTGAGGACTAAAAACGGCCCATCCACCTATAATAAAATCCTCTGATATT CCTGTACTTATGTCTCAGTGAGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGAGAGTCATGGTGCGCTGCAGTTGCATGTTGTTTAGAAAGTATGGAAACTTCATTGAT AACCTGAGACTCTTCACCAAGGGAGGAAGTGGTGGAATGGGCTACCCTCGCTTAGGTGGA GAAGGTGGAAAAGGGGGTGACGTCTGGGTTGTAGCCCATAACAAAATGACTTTAAAACAA CTTAAAGACAAATATCCTCAGAAACGGTTTGTGGCTGGAGAAGGAGCAAATAGTCGAGTT AGTGCACTGAAAGGCTCCAAAGGAAAAGACTGTGAAATTCCTGTACCTGTGGGTATTTCA GTAACTGATGAAAATGGTAAAATCATAGGAGAACTCAATAAAGAGAAAGACAGAATTTTG GTAGCTGAAGGAGGTATTGGTGGTAAATTGCTTACAAATTTCTTACCATTGAAAGGCCAG AGAAGAGTAATTCACCTAGATCTAAAACTTATAGCTGATGTAGGCCTAGTGGGATTCCCA AATGCTGGAAAATCCTCTTTGCTAAGTAAGATTTCTCATGCAAAACCTGCAATTGCAGAT TATGCATTTACAACATTAAAGCCTGAACTTGGAAAAATTATGTATAATGATTTCAAACAG ATCTCAGTAGCTGATCTTCCTGGTTTGATAGAAGGAGCACATATGAACAAAGGAATGGGC CACAAATTCCTCAAGCATATAGAAAGAACTAAACAACTACTTTTTGTTGTCGATATTTCT GGATTTCAGCTTTCTTCACAAACTCGGTATAGAACTGCCTTTGAAACCATAATACTACTT ACAAAAGAGTTGGAGTTGTACAAAGAGGAACTTCAGACAAAACCTGCTCTCCTGGCAGTT AATAAAATGGACTTGCCAGATGCCCAAGATAAGTTTCAGGTACTGATGAACCAACTCCAA AGTCCTAAAGATTTTTTACATTTATTTGAAAAAAACATGATTCCAGAGAGGACTGTGGAG TTCCAACACATCATCCCCATCTCTGCAGTTACTGGAGAAGGAATAGATGAACTAAAGACC TTCATAAGGAAATCACTGGATGAACATGCCAACCAGGAAAATGATGCATGTCATAAGAAG CAGTTGCTTAATTTACGTATTTCTAACACAATATCTTATAGTGAGCCACCATCAAATACC GCTGTTACTAGTCCCAGAATGGATATAACTTAAATTAAAAGTGGTGTTGAAACTGTGTTC ATTTGAAAGCTTTTCCACACATATTTTTTAGAAGTTTAGTTGTTTCTACATGATGGTGTC TGTGCCATCATTTAAGAACCATACTTTTAAAAGATGTTTTATAGCTAAATCCATCAACAG TGAAAAAGTAACTGAGGACTAAAAACGGCCCATCCACCTATAATAAAATCCTCTGATATT CCTGTACTTATGTCTCAGTGAGTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 41-199, + strand, RNAz p=0.881041 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 41-199, + strand, RNAz p=0.881041 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 41-243, gnl|bosTau2|chr4 (43932485-43932284) | |
| 41-243, gnl|canFam2|chr14 (19196853-19197091) | |
| 41-243, gnl|danRer3|chr16 (27775894-27776117) | |
| 41-243, gnl|dasNov1|scaffold_74739 (2153-2384) | |
| 41-243, gnl|echTel1|scaffold_287165 (40297-40547) | |
| 41-243, gnl|fr1|chrUn (62423873-62423659) | |
| 41-243, gnl|galGal2|chr2 (21012992-21013207) | |
| 41-243, gnl|hg17|chr7 (89626746-89626981) | |
| 41-243, gnl|Hg17|chr7 (89626779-89626980) | |
| 41-243, gnl|loxAfr1|scaffold_2671 (6653-6421) | |
| 41-243, gnl|mm7|chr5 (5563453-5563214) | |
| 41-243, gnl|Mm7|chr5 (5563414-5563213) | |
| 41-243, gnl|monDom2|scaffold_7 (58357057-58357295) | |
| 41-243, gnl|oryCun1|scaffold_156192 (538-308) | |
| 41-243, gnl|panTro1|chr6 (91183410-91183645) | |
| 41-243, gnl|rheMac2|chr3 (126847918-126847684) | |
| 41-243, gnl|rn3|chr4 (25165200-25165441) | |
| 41-243, gnl|tetNig1|chr8 (7596434-7596220) | |
| 41-243, gnl|xenTro1|scaffold_553 (196290-196070) | |
| 327-473, gnl|bosTau2|chr4 (43927827-43927681) | |
| 327-473, gnl|canFam2|chr14 (19205973-19206136) | |
| 327-473, gnl|danRer3|chr16 (27779583-27779737) | |
| 327-473, gnl|dasNov1|scaffold_74739 (4913-5075) | |
| 327-473, gnl|echTel1|scaffold_121054 (149-312) | |
| 327-473, gnl|fr1|chrUn (62423336-62423173) | |
| 327-473, gnl|galGal2|chr2 (21013929-21014092) | |
| 327-473, gnl|hg17|chr7 (89629045-89629208) | |
| 327-473, gnl|Hg17|chr7 (89629049-89629195) | |
| 327-473, gnl|mm7|chr5 (5561396-5561233) | |
| 327-473, gnl|Mm7|chr5 (5561391-5561244) | |
| 327-473, gnl|monDom2|scaffold_7 (58365411-58365574) | |
| 327-473, gnl|oryCun1|scaffold_197660 (8572-8409) | |
| 327-473, gnl|panTro1|chr6 (91185702-91185865) | |
| 327-473, gnl|rheMac2|chr3 (126845323-126845160) | |
| 327-473, gnl|rn3|chr4 (25167115-25167278) | |
| 327-473, gnl|tetNig1|chr8 (7595917-7595761) | |
| 327-473, gnl|xenTro1|scaffold_553 (193394-193233) | |
| 909-1345, gnl|bosTau2|chr4 (43787625-43787187) | |
| 909-1345, gnl|Hg17|chr7 (89658855-89660048) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 41-243, gnl|bosTau2|chr4 (43932485-43932284) | |
| 41-243, gnl|canFam2|chr14 (19196853-19197091) | |
| 41-243, gnl|danRer3|chr16 (27775894-27776117) | |
| 41-243, gnl|dasNov1|scaffold_74739 (2153-2384) | |
| 41-243, gnl|echTel1|scaffold_287165 (40297-40547) | |
| 41-243, gnl|fr1|chrUn (62423873-62423659) | |
| 41-243, gnl|galGal2|chr2 (21012992-21013207) | |
| 41-243, gnl|hg17|chr7 (89626746-89626981) | |
| 41-243, gnl|Hg17|chr7 (89626779-89626980) | |
| 41-243, gnl|loxAfr1|scaffold_2671 (6653-6421) | |
| 41-243, gnl|mm7|chr5 (5563453-5563214) | |
| 41-243, gnl|Mm7|chr5 (5563414-5563213) | |
| 41-243, gnl|monDom2|scaffold_7 (58357057-58357295) | |
| 41-243, gnl|oryCun1|scaffold_156192 (538-308) | |
| 41-243, gnl|panTro1|chr6 (91183410-91183645) | |
| 41-243, gnl|rheMac2|chr3 (126847918-126847684) | |
| 41-243, gnl|rn3|chr4 (25165200-25165441) | |
| 41-243, gnl|tetNig1|chr8 (7596434-7596220) | |
| 41-243, gnl|xenTro1|scaffold_553 (196290-196070) | |
| 327-473, gnl|bosTau2|chr4 (43927827-43927681) | |
| 327-473, gnl|canFam2|chr14 (19205973-19206136) | |
| 327-473, gnl|danRer3|chr16 (27779583-27779737) | |
| 327-473, gnl|dasNov1|scaffold_74739 (4913-5075) | |
| 327-473, gnl|echTel1|scaffold_121054 (149-312) | |
| 327-473, gnl|fr1|chrUn (62423336-62423173) | |
| 327-473, gnl|galGal2|chr2 (21013929-21014092) | |
| 327-473, gnl|hg17|chr7 (89629045-89629208) | |
| 327-473, gnl|Hg17|chr7 (89629049-89629195) | |
| 327-473, gnl|mm7|chr5 (5561396-5561233) | |
| 327-473, gnl|Mm7|chr5 (5561391-5561244) | |
| 327-473, gnl|monDom2|scaffold_7 (58365411-58365574) | |
| 327-473, gnl|oryCun1|scaffold_197660 (8572-8409) | |
| 327-473, gnl|panTro1|chr6 (91185702-91185865) | |
| 327-473, gnl|rheMac2|chr3 (126845323-126845160) | |
| 327-473, gnl|rn3|chr4 (25167115-25167278) | |
| 327-473, gnl|tetNig1|chr8 (7595917-7595761) | |
| 327-473, gnl|xenTro1|scaffold_553 (193394-193233) | |
| 909-1345, gnl|bosTau2|chr4 (43787625-43787187) | |
| 909-1345, gnl|Hg17|chr7 (89658855-89660048) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| sug (0.636456) | |
| mcp (0.511945) | |
| mgp (0.461361) | |
| ecc (0.23007) | |
| gul (0.177588) | |
| eye (0.170503) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| ski (0.146735) | |
| liv (0.146284) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| tra (0.123092) | |
| cty (0.10408) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sug (0.636456) | |
| mcp (0.511945) | |
| mgp (0.461361) | |
| ecc (0.23007) | |
| gul (0.177588) | |
| eye (0.170503) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| ski (0.146735) | |
| liv (0.146284) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| tra (0.123092) | |
| cty (0.10408) |