Non-Coding RNA Search

Ss1.1-recc2817c_m23.5

Sequence:


               
               CTGGGGGCCCTGCTCACCTCCCCTCTGCTCTTGCCCAGCCTGGGGGAGGAAAGAGGGCAG
AGGGGAGGAGCCGCAGCCCTCAGCACCCCGCGGGGTTCTCATCCCCTTTGGGCAGTGGGC
ACGGGGGAGCCCTCTTCCCAACCCTGGGCTGCTTCCTGGGGGCTCTCCAAACCCCCCCCC
CTCCAGGACCAAGTCCCCCATCACACTGGGAGTGTGGATTCCAGCAAAGGCGCTGGAAAA
AAAGACTCTCCACAGACCCCCTATGGGGGACCCCAACCTAGGGCCAACGCGGGGTGTGTC
GATACTTCGGACCGTCCGGGCCCGGCCCCTTTGCTGAGAAGACTCCTTGGACGATTTCTC
AAAAGAACCCCACATACACCCCCTCACAAGCCACCCCTCCCGAGGCAGGGGGCCCTCCGC
CCTCTCCCCTGTGTACTCCCCACCTGTGTTCTGTTTGACCAGCACAGAAATATTAAACGT
CCTCTATTCAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGGGGCCCTGCTCACCTCCCCTCTGCTCTTGCCCAGCCTGGGGGAGGAAAGAGGGCAG
AGGGGAGGAGCCGCAGCCCTCAGCACCCCGCGGGGTTCTCATCCCCTTTGGGCAGTGGGC
ACGGGGGAGCCCTCTTCCCAACCCTGGGCTGCTTCCTGGGGGCTCTCCAAACCCCCCCCC
CTCCAGGACCAAGTCCCCCATCACACTGGGAGTGTGGATTCCAGCAAAGGCGCTGGAAAA
AAAGACTCTCCACAGACCCCCTATGGGGGACCCCAACCTAGGGCCAACGCGGGGTGTGTC
GATACTTCGGACCGTCCGGGCCCGGCCCCTTTGCTGAGAAGACTCCTTGGACGATTTCTC
AAAAGAACCCCACATACACCCCCTCACAAGCCACCCCTCCCGAGGCAGGGGGCCCTCCGC
CCTCTCCCCTGTGTACTCCCCACCTGTGTTCTGTTTGACCAGCACAGAAATATTAAACGT
CCTCTATTCAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               57-343, - strand, RNAz p=0.996399

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               57-343, - strand, RNAz p=0.996399

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               187-294, - strand, RNAmicro p=0.999326
               

               
               180-297, + strand, RNAmicro p=0.995649

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               187-294, - strand, RNAmicro p=0.999326
               

               
               180-297, + strand, RNAmicro p=0.995649

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               57-343, gnl|bosTau2|chr10 (18488299-18488003)
               

               
               57-343, gnl|Hg17|chr6 (41675910-41676191)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               57-343, gnl|bosTau2|chr10 (18488299-18488003)
               

               
               57-343, gnl|Hg17|chr6 (41675910-41676191)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               elu (0.770713)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.770713)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)

	187-294, - strand, RNAmicro p=0.999326
	180-297, + strand, RNAmicro p=0.995649

	57-343, gnl\|bosTau2\|chr10 (18488299-18488003)
	57-343, gnl\|Hg17\|chr6 (41675910-41676191)

	elu (0.770713)
	nco (0.161734)
	hyp (0.142837)
	nmm (0.132802)
	cly (0.120642)
	ecc (0.115035)