Non-Coding RNA Search

Ss1.1-recc2817c_o1.5

Sequence:


               
               GATTGTCAGTGAGCCCTTCTGAAAAACTAGGTTCTGGAGTTTATGCTACAATGAAGTAAT
CAGTAAGCCTTTTGTTTAATACAAGATACAGTGGAACAATATGTGAACTGGTAAAGAGCT
ACCTTTTATGTTTTATACTGAATTCTTTGAAAATTCTTCCAGTTCTTTAATTTGAAATTG
AAACTCATAATTTTCTAAAGAGTTTTTGGAATTTATTAACAATTTGGGCAATTTATGAAG
GGATTTTATGTTAATAGAAAGATTGGAATGACTTGTGGCTGAGGTAATTCCTAGAACTTT
CTCCTTCCTTTCCTTTTTAAGTGAGTAGTTGGTATTAGGAGTTTACTTTGTGTTGGTTCC
TGAAATCAAAGACTGTGTACAATATGACTTCCATCTGAACTAGAAAAGTATTAAAAATAG
GCCAGTATCAACATTCTTGGCTCAAAGGGTGGGGAAGTGGGTTGGTTCTGATGAATGAGG
TAAATCTTACCCAGTTAAAAAAGACCAATTTTAGAGTTCTTCTAATTTGCTTTTGCCAAT
TATAAACTTTACAAGTGAAACTGCTGTAACTCAGTTTAAATTTTAAAGTTGATATAATAG
GAAAAACATTCAAATATTTACTGGTAGTTGCCACAAATCTGATCCTGTGGATTATGAAAT
GCGTTCCCTCTTTCTGCTGTAACTCATCGCTGCATTTGTTCTCTAGCTGTCCATATTCTC
CCCACCTTGTTTGTCTTCACTGTAAGTTTAAAATAAGATATTTCCAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTGTCAGTGAGCCCTTCTGAAAAACTAGGTTCTGGAGTTTATGCTACAATGAAGTAAT
CAGTAAGCCTTTTGTTTAATACAAGATACAGTGGAACAATATGTGAACTGGTAAAGAGCT
ACCTTTTATGTTTTATACTGAATTCTTTGAAAATTCTTCCAGTTCTTTAATTTGAAATTG
AAACTCATAATTTTCTAAAGAGTTTTTGGAATTTATTAACAATTTGGGCAATTTATGAAG
GGATTTTATGTTAATAGAAAGATTGGAATGACTTGTGGCTGAGGTAATTCCTAGAACTTT
CTCCTTCCTTTCCTTTTTAAGTGAGTAGTTGGTATTAGGAGTTTACTTTGTGTTGGTTCC
TGAAATCAAAGACTGTGTACAATATGACTTCCATCTGAACTAGAAAAGTATTAAAAATAG
GCCAGTATCAACATTCTTGGCTCAAAGGGTGGGGAAGTGGGTTGGTTCTGATGAATGAGG
TAAATCTTACCCAGTTAAAAAAGACCAATTTTAGAGTTCTTCTAATTTGCTTTTGCCAAT
TATAAACTTTACAAGTGAAACTGCTGTAACTCAGTTTAAATTTTAAAGTTGATATAATAG
GAAAAACATTCAAATATTTACTGGTAGTTGCCACAAATCTGATCCTGTGGATTATGAAAT
GCGTTCCCTCTTTCTGCTGTAACTCATCGCTGCATTTGTTCTCTAGCTGTCCATATTCTC
CCCACCTTGTTTGTCTTCACTGTAAGTTTAAAATAAGATATTTCCAAG

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-768, gnl|bosTau2|chr14 (37758188-37757414)
               

               
               1-768, gnl|canFam2|chr13 (5985969-5986762)
               

               
               1-768, gnl|dasNov1|scaffold_96619 (2675-3455)
               

               
               1-768, gnl|echTel1|scaffold_280211 (4646-3803)
               

               
               1-768, gnl|hg17|chr8 (102278975-102279768)
               

               
               1-768, gnl|Hg17|chr8 (102279968-102279226)
               

               
               1-768, gnl|loxAfr1|scaffold_8375 (94786-93965)
               

               
               1-768, gnl|mm7|chr15 (37110173-37110872)
               

               
               1-768, gnl|monDom2|scaffold_3 (62410858-62410064)
               

               
               1-768, gnl|oryCun1|scaffold_208164 (47552-46769)
               

               
               1-768, gnl|panTro1|chr7 (104637308-104638101)
               

               
               1-768, gnl|rheMac2|chr8 (103716164-103716944)
               

               
               1-768, gnl|rn3|chr7 (72530772-72531438)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-768, gnl|bosTau2|chr14 (37758188-37757414)
               

               
               1-768, gnl|canFam2|chr13 (5985969-5986762)
               

               
               1-768, gnl|dasNov1|scaffold_96619 (2675-3455)
               

               
               1-768, gnl|echTel1|scaffold_280211 (4646-3803)
               

               
               1-768, gnl|hg17|chr8 (102278975-102279768)
               

               
               1-768, gnl|Hg17|chr8 (102279968-102279226)
               

               
               1-768, gnl|loxAfr1|scaffold_8375 (94786-93965)
               

               
               1-768, gnl|mm7|chr15 (37110173-37110872)
               

               
               1-768, gnl|monDom2|scaffold_3 (62410858-62410064)
               

               
               1-768, gnl|oryCun1|scaffold_208164 (47552-46769)
               

               
               1-768, gnl|panTro1|chr7 (104637308-104638101)
               

               
               1-768, gnl|rheMac2|chr8 (103716164-103716944)
               

               
               1-768, gnl|rn3|chr7 (72530772-72531438)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               cbr (0.255951)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.255951)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               ecc (0.115035)

	1-768, gnl\|bosTau2\|chr14 (37758188-37757414)
	1-768, gnl\|canFam2\|chr13 (5985969-5986762)
	1-768, gnl\|dasNov1\|scaffold_96619 (2675-3455)
	1-768, gnl\|echTel1\|scaffold_280211 (4646-3803)
	1-768, gnl\|hg17\|chr8 (102278975-102279768)
	1-768, gnl\|Hg17\|chr8 (102279968-102279226)
	1-768, gnl\|loxAfr1\|scaffold_8375 (94786-93965)
	1-768, gnl\|mm7\|chr15 (37110173-37110872)
	1-768, gnl\|monDom2\|scaffold_3 (62410858-62410064)
	1-768, gnl\|oryCun1\|scaffold_208164 (47552-46769)
	1-768, gnl\|panTro1\|chr7 (104637308-104638101)
	1-768, gnl\|rheMac2\|chr8 (103716164-103716944)
	1-768, gnl\|rn3\|chr7 (72530772-72531438)