Non-Coding RNA Search

Ss1.1-recc2818c_h23.5

Sequence:


               
               CACCGTGGGTGTTGACTTTAAAATCAAAACTGTAGAGCTTAGAGGAAAGAAAATTAGGTT
ACAGATCTGGGACACAGCAGGTCAGGAGAGATTCAACAGCATTACCTCAGCTTATTACAG
AAGTGCCAAGGGGATCATACTAGTGTATGACATCACCAAGAAGGAGACGTTTGATGATTT
GCCCAAATGGATGAAGATGATTGATAAGTACGCTTCAGAAGACGCAGAGCTCCTCTTGGT
TGGAAACAAGTTGGACTGTGAAACTGACAGAGAGATCAGCAGACAGCAGGGTGAAAAGTT
TGCACAGCAGATAACTGGGATGCGGTTCTGTGAAGCAAGTGCCAAGGACAACTTCAATGT
GGACGAGATATTTCTGAAACTCGTTGATGACATCCTGAAAAAGATGCCTCTGGATCTTTT
GAGGAACGAGCTTTCCAACAGCATCCTCTCGCTACAGCCGGAACCTGAGGTTCCGCCAGA
ACTGCCTCCCCCCAGACCGCACGTCCGATGCTGTTGATTTGCTTCTTTGGAGACAAAGTG
GGAACAACCCCCGGAAAGGGGAAAGGTCCCATCCTGCACTACAATCATTTTGACAATTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCGTGGGTGTTGACTTTAAAATCAAAACTGTAGAGCTTAGAGGAAAGAAAATTAGGTT
ACAGATCTGGGACACAGCAGGTCAGGAGAGATTCAACAGCATTACCTCAGCTTATTACAG
AAGTGCCAAGGGGATCATACTAGTGTATGACATCACCAAGAAGGAGACGTTTGATGATTT
GCCCAAATGGATGAAGATGATTGATAAGTACGCTTCAGAAGACGCAGAGCTCCTCTTGGT
TGGAAACAAGTTGGACTGTGAAACTGACAGAGAGATCAGCAGACAGCAGGGTGAAAAGTT
TGCACAGCAGATAACTGGGATGCGGTTCTGTGAAGCAAGTGCCAAGGACAACTTCAATGT
GGACGAGATATTTCTGAAACTCGTTGATGACATCCTGAAAAAGATGCCTCTGGATCTTTT
GAGGAACGAGCTTTCCAACAGCATCCTCTCGCTACAGCCGGAACCTGAGGTTCCGCCAGA
ACTGCCTCCCCCCAGACCGCACGTCCGATGCTGTTGATTTGCTTCTTTGGAGACAAAGTG
GGAACAACCCCCGGAAAGGGGAAAGGTCCCATCCTGCACTACAATCATTTTGACAATTTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12851149|dbj|BAB28956.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12851149|dbj|BAB28956.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               66-208, gnl|bosTau2|chr24 (28528785-28528927)
               

               
               66-208, gnl|Hg17|chr18 (8623183-8623325)
               

               
               66-208, gnl|Mm7|chr17 (64773878-64773736)
               


               
               401-600, gnl|bosTau2|chr24 (28532904-28533101)
               

               
               401-600, gnl|Hg17|chr18 (8628144-8628346)
               

               
               401-600, gnl|Mm7|chr17 (64769232-64769036)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               66-208, gnl|bosTau2|chr24 (28528785-28528927)
               

               
               66-208, gnl|Hg17|chr18 (8623183-8623325)
               

               
               66-208, gnl|Mm7|chr17 (64773878-64773736)
               


               
               401-600, gnl|bosTau2|chr24 (28532904-28533101)
               

               
               401-600, gnl|Hg17|chr18 (8628144-8628346)
               

               
               401-600, gnl|Mm7|chr17 (64769232-64769036)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fce (0.271592)
               

               
               ssp (0.13552)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               ssp (0.13552)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

	66-208, gnl\|bosTau2\|chr24 (28528785-28528927)
	66-208, gnl\|Hg17\|chr18 (8623183-8623325)
	66-208, gnl\|Mm7\|chr17 (64773878-64773736)

	401-600, gnl\|bosTau2\|chr24 (28532904-28533101)
	401-600, gnl\|Hg17\|chr18 (8628144-8628346)
	401-600, gnl\|Mm7\|chr17 (64769232-64769036)