Ss1.1-recc2818c_i3.5
|
AGCCCTTTTCATGCCCTGGATCTCTAGCCTGGAATTTACAGGCAGAGCCAGAACACCTCT
CTCCATCTGACCACCATCCAGCCCTGGCACGTAGCATCCTGCAGCAGGGTTAACTTGACA
GTGGTGGAAATTGTGCCAGGGTGCTCCTCACAGGGCCATCACCAGTGACCCAAACTGTTC
TTAACAGTGACTTCTGGGTAGTCCTGGCATGCTGACATCAGCCCCTTGAGGAGGGCTTTA
GTCTTTCTCTAAGTCCCCAGTAATGGACAGTTCTGCCCTCTGTCCCTTCCTGGTGGAAAC
GATAATTCTAAGTGATCCTAAGGGGTTTAGGGACGTTACCCGAGCTCAGGTTGGGCTTCC
CTAGGCCTCATCATTCATGCTCCACACCAAAGCAGGATACCCCACTGCTTCCCTGGCAGC
CCTACACCCTGAAGAGAGGGAGACCTTCTCCTGATGTCAGTGGGGTTGTTAAAAACACCC
TCTTTCCCACCGGCTGCTCCTCCAACCCCAGCCACTTGTCAGGCTTTCCTCCTGGCCACT
GTATTTTGGGATAAGGGGAGTGGGTGGGCATATTCTGGAGAGGAGCAGAAGTTCAAGGGC
CCAGAAGTTTGACATGGAACAGGGGATCAGAGAGTCCCAGGGAGAGGCCCAGGAGCTGGC
TGCAGGCCACTTTGTACATGGAATGTATTATATGGGGTCTGGGCTCCAGCCAGAGAACAA
TCTTCTATTTCTGTTGTTTCCTTATTAAAATGGTGTTTTTGAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGCCCTTTTCATGCCCTGGATCTCTAGCCTGGAATTTACAGGCAGAGCCAGAACACCTCT
CTCCATCTGACCACCATCCAGCCCTGGCACGTAGCATCCTGCAGCAGGGTTAACTTGACA
GTGGTGGAAATTGTGCCAGGGTGCTCCTCACAGGGCCATCACCAGTGACCCAAACTGTTC
TTAACAGTGACTTCTGGGTAGTCCTGGCATGCTGACATCAGCCCCTTGAGGAGGGCTTTA
GTCTTTCTCTAAGTCCCCAGTAATGGACAGTTCTGCCCTCTGTCCCTTCCTGGTGGAAAC
GATAATTCTAAGTGATCCTAAGGGGTTTAGGGACGTTACCCGAGCTCAGGTTGGGCTTCC
CTAGGCCTCATCATTCATGCTCCACACCAAAGCAGGATACCCCACTGCTTCCCTGGCAGC
CCTACACCCTGAAGAGAGGGAGACCTTCTCCTGATGTCAGTGGGGTTGTTAAAAACACCC
TCTTTCCCACCGGCTGCTCCTCCAACCCCAGCCACTTGTCAGGCTTTCCTCCTGGCCACT
GTATTTTGGGATAAGGGGAGTGGGTGGGCATATTCTGGAGAGGAGCAGAAGTTCAAGGGC
CCAGAAGTTTGACATGGAACAGGGGATCAGAGAGTCCCAGGGAGAGGCCCAGGAGCTGGC
TGCAGGCCACTTTGTACATGGAATGTATTATATGGGGTCTGGGCTCCAGCCAGAGAACAA
TCTTCTATTTCTGTTGTTTCCTTATTAAAATGGTGTTTTTGAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
526-624, + strand, RNAmicro p=0.98673 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
526-624, + strand, RNAmicro p=0.98673 |
Human gene identifier and UTR site,
human gene reading direction
|
3-768, gnl|bosTau2|chr19 (13864001-13863245) |
|
3-768, gnl|canFam2|chr9 (46445537-46446303) |
|
3-768, gnl|dasNov1|scaffold_17926 (15479-16234) |
|
3-768, gnl|hg17|chr17 (24305925-24306721) |
|
3-768, gnl|Hg17|chr17 (24306814-24306069) |
|
3-768, gnl|loxAfr1|scaffold_608 (169966-169186) |
|
3-768, gnl|mm7|chr11 (78060732-78059992) |
|
3-768, gnl|Mm7|chr11 (78059891-78060619) |
|
3-768, gnl|monDom2|scaffold_44 (14874905-14875798) |
|
3-768, gnl|oryCun1|scaffold_192408 (10488-9727) |
|
3-768, gnl|panTro1|chr19 (27651325-27652112) |
|
3-768, gnl|rheMac2|chr16 (24172849-24173637) |
|
3-768, gnl|rn3|chr10 (64034752-64034011) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
3-768, gnl|bosTau2|chr19 (13864001-13863245) |
|
3-768, gnl|canFam2|chr9 (46445537-46446303) |
|
3-768, gnl|dasNov1|scaffold_17926 (15479-16234) |
|
3-768, gnl|hg17|chr17 (24305925-24306721) |
|
3-768, gnl|Hg17|chr17 (24306814-24306069) |
|
3-768, gnl|loxAfr1|scaffold_608 (169966-169186) |
|
3-768, gnl|mm7|chr11 (78060732-78059992) |
|
3-768, gnl|Mm7|chr11 (78059891-78060619) |
|
3-768, gnl|monDom2|scaffold_44 (14874905-14875798) |
|
3-768, gnl|oryCun1|scaffold_192408 (10488-9727) |
|
3-768, gnl|panTro1|chr19 (27651325-27652112) |
|
3-768, gnl|rheMac2|chr16 (24172849-24173637) |
|
3-768, gnl|rn3|chr10 (64034752-64034011) |
|
fce (1.08637) |
|
ecc (0.46014) |
|
fcc (0.197785) |
|
fce (1.08637) |
|
ecc (0.46014) |
|
fcc (0.197785) |
