Ss1.1-recc2818c_j19.5
|
CTCGGTTTTTTTTTTTTTTTTTTTTTTTTAATGTTTGTTTTTATTTTCATAAGCTTCTGC
TAAATAAAGGCGTAACAAAGGCCTTGGAACACAGAGAAGCCACTGAAAACCTGGTCTGTG
TCCAGGCAGGCTTGTCCTCAGCTCCCATTTCAATCTCAGCCACTTGGAGGAAGCCTTCTT
AACCTCAGGAAGGGGTGTTTACTACCCCAACCCTCACTCTCCATGGCCCAGCTAAGACTC
TGCACCAGGGGTGCCAAGACATGGGACTGCAGCCATGGTGGGCCTGCTACAGTTGCCTAG
GCCACCTGCAGGTTGACCAGTCTTGAAAAGACTAATTTTCTCAGGTAAGAGGTGGGCTGC
TTAAGACTCTCACTCATTCCTGCATCACCCCTTGTAGGTGTCCTCTACAGGCCATTCCCT
GCCAGCTGACCTGTAACAGCTCTGCTTACCGTCTTCACAAAGTATAAGCTATCTTCACTG
TCCAGAGGCACGATTCTAAAAGAGGAAAGTGATGGGAGAGACATATATTGAATTTACGAT
GTTTTTTTCAACGAAAAAGTAACTCACAGACTCAGATCTCTCTCAGGAAGTTTTCAAAAC
ACTGTTTGCATGGATGCAAAATTCCCCTTGGAGGGGATCAGATTCACCCCCAGCCCCACC
CTAGCCTTTCCACGGAAAGCATTCAGGCAGCTCTGAGCTCAGCCCTGGAGTAATGCCACT
GCTAGGTGTGGAACTGTGAGACCATCCATGCCAGCAGATACAGGTAGACTTTTTGTTGCT
AAAACTTGCCCCAAACGAGGGACACACTATGAACATATACTTACCTCCCCAGATTATTCA
CAGCATGGATATGAAAAGCCATCTTGGAGCTGTAGA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTCGGTTTTTTTTTTTTTTTTTTTTTTTTAATGTTTGTTTTTATTTTCATAAGCTTCTGC
TAAATAAAGGCGTAACAAAGGCCTTGGAACACAGAGAAGCCACTGAAAACCTGGTCTGTG
TCCAGGCAGGCTTGTCCTCAGCTCCCATTTCAATCTCAGCCACTTGGAGGAAGCCTTCTT
AACCTCAGGAAGGGGTGTTTACTACCCCAACCCTCACTCTCCATGGCCCAGCTAAGACTC
TGCACCAGGGGTGCCAAGACATGGGACTGCAGCCATGGTGGGCCTGCTACAGTTGCCTAG
GCCACCTGCAGGTTGACCAGTCTTGAAAAGACTAATTTTCTCAGGTAAGAGGTGGGCTGC
TTAAGACTCTCACTCATTCCTGCATCACCCCTTGTAGGTGTCCTCTACAGGCCATTCCCT
GCCAGCTGACCTGTAACAGCTCTGCTTACCGTCTTCACAAAGTATAAGCTATCTTCACTG
TCCAGAGGCACGATTCTAAAAGAGGAAAGTGATGGGAGAGACATATATTGAATTTACGAT
GTTTTTTTCAACGAAAAAGTAACTCACAGACTCAGATCTCTCTCAGGAAGTTTTCAAAAC
ACTGTTTGCATGGATGCAAAATTCCCCTTGGAGGGGATCAGATTCACCCCCAGCCCCACC
CTAGCCTTTCCACGGAAAGCATTCAGGCAGCTCTGAGCTCAGCCCTGGAGTAATGCCACT
GCTAGGTGTGGAACTGTGAGACCATCCATGCCAGCAGATACAGGTAGACTTTTTGTTGCT
AAAACTTGCCCCAAACGAGGGACACACTATGAACATATACTTACCTCCCCAGATTATTCA
CAGCATGGATATGAAAAGCCATCTTGGAGCTGTAGA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
19-292, gnl|bosTau2|chr13 (34713200-34713497) |
|
19-292, gnl|canFam2|chr24 (20976283-20975941) |
|
19-292, gnl|echTel1|scaffold_285765 (73283-72914) |
|
19-292, gnl|hg17|chr20 (3250441-3250803) |
|
19-292, gnl|loxAfr1|scaffold_37753 (12990-12622) |
|
19-292, gnl|oryCun1|scaffold_200443 (88944-88655) |
|
19-292, gnl|panTro1|chr21 (3233930-3234292) |
|
19-292, gnl|rheMac2|chr10 (36643438-36643808) |
| |
|
352-687, gnl|bosTau2|chr13 (34713579-34713919) |
|
352-687, gnl|Hg17|chr20 (3250765-3251136) |
|
352-687, gnl|Mm7|chr2 (130515786-130516239) |
| |
|
688-876, gnl|bosTau2|chr13 (34713946-34714143) |
|
688-876, gnl|Hg17|chr20 (3251162-3251350) |
|
688-876, gnl|Mm7|chr2 (130516323-130516631) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
19-292, gnl|bosTau2|chr13 (34713200-34713497) |
|
19-292, gnl|canFam2|chr24 (20976283-20975941) |
|
19-292, gnl|echTel1|scaffold_285765 (73283-72914) |
|
19-292, gnl|hg17|chr20 (3250441-3250803) |
|
19-292, gnl|loxAfr1|scaffold_37753 (12990-12622) |
|
19-292, gnl|oryCun1|scaffold_200443 (88944-88655) |
|
19-292, gnl|panTro1|chr21 (3233930-3234292) |
|
19-292, gnl|rheMac2|chr10 (36643438-36643808) |
| |
|
352-687, gnl|bosTau2|chr13 (34713579-34713919) |
|
352-687, gnl|Hg17|chr20 (3250765-3251136) |
|
352-687, gnl|Mm7|chr2 (130515786-130516239) |
| |
|
688-876, gnl|bosTau2|chr13 (34713946-34714143) |
|
688-876, gnl|Hg17|chr20 (3251162-3251350) |
|
688-876, gnl|Mm7|chr2 (130516323-130516631) |
