Ss1.1-recc2818c_k16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGCCGCGTTCAGTCGGATCCCGGCAGCAGCTGAAGCGGCTCTTGTCTTTTCTGGCTCCT TGCTATCTCCTTTTCGCTTCCGGAAATATGGCCTCCGGTGTGGCTGTCTCTGACGGGGTC ATCAAAGTGTTCAATGACATGAAGGTGCGTAAGTCCTCGACACCGGAGGAGGTGAAGAAG CGCAAGAAGGCGGTGCTCTTCTGCCTGAGCGAGGACAAGAAGAACATCATCCTGGAGGAG GGCAAGGAGATCCTCGTGGGTGACGTGGGCCAGACTGTAGACGACCCCTATGCCACCTTT GTCAAGATGCTGCCGGACAAGGACTGCCGCTATGCCCTCTATGACGCCACCTACGAGACC AAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCTGGGCCCCTGAGTGTGCACCCCTG AAGAGCAAAATGATCTACGCCAGCTCCAAGGACGCCATCAAGAAGAAGCTGACAGGGATC AAGCATGAATTACAAGCGAACTGCTACGAGGAGGTCAAGGACCGCTGCACCCTGGCAGAG AAGCTGGGGGGCAGCGCCGTCATCTCCCTGGAGGGCAAGCCTTTGTGAGCCCCCTCCAGC CCCCTGCCTGGAGCATCTGGCAGCCCCAGACCTGCCCACGGGGGTTGCAGGCTGCCCCCT TCCTGCCAGACCGGAGGGGCTGGGGGGATCCCAGCAGGGGGAGGGCAATCCCTTCACCCC ACTTGCCAAACAGCCCCCCCCAACCCCCTGGACCTTCCCCCTCCTCCCACCACCCCTGAC GGTTCTGGCCTTCCCAAACCGCTTTTGATCTTCTGATTCCTCTTGGGTTGAAACAGACCA AGTTCCCCCCAGGCACCCCTGTTTGGGGGGGGCCTGTATTTTTTTTAACGACACCCCAGT TCCCGACCTGTTCCTTCCTTTTCCCATGCTGCCAACTTCTAACCGCAATAGTGACTCTGT GCTTGTCTGTTTAGTTCTGTGTATAAATGGAATGATGTGGAGATGACCCCTCCCTGCGCC ACCTGGTCCCCCCCCCCTTTCCCCTGGTCACAGCCACTCATGGAAGCAGGACCAGTAAGG GACCTTCAATTAAAAAAGAAAAAGACACAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGCCGCGTTCAGTCGGATCCCGGCAGCAGCTGAAGCGGCTCTTGTCTTTTCTGGCTCCT TGCTATCTCCTTTTCGCTTCCGGAAATATGGCCTCCGGTGTGGCTGTCTCTGACGGGGTC ATCAAAGTGTTCAATGACATGAAGGTGCGTAAGTCCTCGACACCGGAGGAGGTGAAGAAG CGCAAGAAGGCGGTGCTCTTCTGCCTGAGCGAGGACAAGAAGAACATCATCCTGGAGGAG GGCAAGGAGATCCTCGTGGGTGACGTGGGCCAGACTGTAGACGACCCCTATGCCACCTTT GTCAAGATGCTGCCGGACAAGGACTGCCGCTATGCCCTCTATGACGCCACCTACGAGACC AAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCTGGGCCCCTGAGTGTGCACCCCTG AAGAGCAAAATGATCTACGCCAGCTCCAAGGACGCCATCAAGAAGAAGCTGACAGGGATC AAGCATGAATTACAAGCGAACTGCTACGAGGAGGTCAAGGACCGCTGCACCCTGGCAGAG AAGCTGGGGGGCAGCGCCGTCATCTCCCTGGAGGGCAAGCCTTTGTGAGCCCCCTCCAGC CCCCTGCCTGGAGCATCTGGCAGCCCCAGACCTGCCCACGGGGGTTGCAGGCTGCCCCCT TCCTGCCAGACCGGAGGGGCTGGGGGGATCCCAGCAGGGGGAGGGCAATCCCTTCACCCC ACTTGCCAAACAGCCCCCCCCAACCCCCTGGACCTTCCCCCTCCTCCCACCACCCCTGAC GGTTCTGGCCTTCCCAAACCGCTTTTGATCTTCTGATTCCTCTTGGGTTGAAACAGACCA AGTTCCCCCCAGGCACCCCTGTTTGGGGGGGGCCTGTATTTTTTTTAACGACACCCCAGT TCCCGACCTGTTCCTTCCTTTTCCCATGCTGCCAACTTCTAACCGCAATAGTGACTCTGT GCTTGTCTGTTTAGTTCTGTGTATAAATGGAATGATGTGGAGATGACCCCTCCCTGCGCC ACCTGGTCCCCCCCCCCTTTCCCCTGGTCACAGCCACTCATGGAAGCAGGACCAGTAAGG GACCTTCAATTAAAAAAGAAAAAGACACAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 85-244, - strand, RNAz p=0.85216 | |
| 485-796, - strand, RNAz p=0.858239 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 85-244, - strand, RNAz p=0.85216 | |
| 485-796, - strand, RNAz p=0.858239 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 8-1110, gnl|bosTau2|chr24 (37277215-37278265) | |
| 8-1110, gnl|Hg17|chr1 (51336233-51335149) | |
| 8-1110, gnl|Mm7|chr8 (41032269-41033354) | |
| 90-399, gnl|bosTau2|chr13 (23543980-23544289) | |
| 90-399, gnl|canFam2|chr24 (8401126-8400841) | |
| 90-399, gnl|canFam2|chr24 (8401169-8400809) | |
| 90-399, gnl|danRer3|chrNA (230023815-230024086) | |
| 90-399, gnl|danRer3|chrNA (230023787-230024124) | |
| 90-399, gnl|dasNov1|scaffold_40599 (8024-7661) | |
| 90-399, gnl|dasNov1|scaffold_60694 (5414-5129) | |
| 90-399, gnl|echTel1|scaffold_319821 (5553-5836) | |
| 90-399, gnl|echTel1|scaffold_319821 (5552-5877) | |
| 90-399, gnl|fr1|chrUn (186345645-186345330) | |
| 90-399, gnl|fr1|chrUn (93241890-93241572) | |
| 90-399, gnl|galGal2|chr14 (16700074-16700359) | |
| 90-399, gnl|galGal2|chr14 (16700057-16700387) | |
| 90-399, gnl|hg17|chr12 (6864321-6864605) | |
| 90-399, gnl|hg17|chr20 (17529342-17529703) | |
| 90-399, gnl|Hg17|chr20 (17529382-17529691) | |
| 90-399, gnl|loxAfr1|scaffold_31353 (20441-20156) | |
| 90-399, gnl|loxAfr1|scaffold_31353 (20459-20122) | |
| 90-399, gnl|mm7|chr2 (143679205-143679559) | |
| 90-399, gnl|Mm7|chr2 (143679241-143679550) | |
| 90-399, gnl|mm7|chr9 (8178076-8177796) | |
| 90-399, gnl|monDom2|scaffold_1 (52090955-52091247) | |
| 90-399, gnl|monDom2|scaffold_1 (52090928-52091282) | |
| 90-399, gnl|oryCun1|scaffold_102464 (994-639) | |
| 90-399, gnl|oryCun1|scaffold_165620 (23383-23098) | |
| 90-399, gnl|panTro1|chr10 (7401097-7401381) | |
| 90-399, gnl|panTro1|chr21 (17380139-17380500) | |
| 90-399, gnl|rheMac2|chr10 (50927216-50927577) | |
| 90-399, gnl|rheMac2|chr11 (7067434-7067719) | |
| 90-399, gnl|rn3|chr20 (661428-661713) | |
| 90-399, gnl|rn3|chr3 (132285272-132285625) | |
| 90-399, gnl|tetNig1|chr1 (8203688-8203406) | |
| 90-399, gnl|tetNig1|chr1 (8203703-8203374) | |
| 90-399, gnl|xenTro1|scaffold_117 (913212-913501) | |
| 90-399, gnl|xenTro1|scaffold_521 (594217-593870) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 8-1110, gnl|bosTau2|chr24 (37277215-37278265) | |
| 8-1110, gnl|Hg17|chr1 (51336233-51335149) | |
| 8-1110, gnl|Mm7|chr8 (41032269-41033354) | |
| 90-399, gnl|bosTau2|chr13 (23543980-23544289) | |
| 90-399, gnl|canFam2|chr24 (8401126-8400841) | |
| 90-399, gnl|canFam2|chr24 (8401169-8400809) | |
| 90-399, gnl|danRer3|chrNA (230023815-230024086) | |
| 90-399, gnl|danRer3|chrNA (230023787-230024124) | |
| 90-399, gnl|dasNov1|scaffold_40599 (8024-7661) | |
| 90-399, gnl|dasNov1|scaffold_60694 (5414-5129) | |
| 90-399, gnl|echTel1|scaffold_319821 (5553-5836) | |
| 90-399, gnl|echTel1|scaffold_319821 (5552-5877) | |
| 90-399, gnl|fr1|chrUn (186345645-186345330) | |
| 90-399, gnl|fr1|chrUn (93241890-93241572) | |
| 90-399, gnl|galGal2|chr14 (16700074-16700359) | |
| 90-399, gnl|galGal2|chr14 (16700057-16700387) | |
| 90-399, gnl|hg17|chr12 (6864321-6864605) | |
| 90-399, gnl|hg17|chr20 (17529342-17529703) | |
| 90-399, gnl|Hg17|chr20 (17529382-17529691) | |
| 90-399, gnl|loxAfr1|scaffold_31353 (20441-20156) | |
| 90-399, gnl|loxAfr1|scaffold_31353 (20459-20122) | |
| 90-399, gnl|mm7|chr2 (143679205-143679559) | |
| 90-399, gnl|Mm7|chr2 (143679241-143679550) | |
| 90-399, gnl|mm7|chr9 (8178076-8177796) | |
| 90-399, gnl|monDom2|scaffold_1 (52090955-52091247) | |
| 90-399, gnl|monDom2|scaffold_1 (52090928-52091282) | |
| 90-399, gnl|oryCun1|scaffold_102464 (994-639) | |
| 90-399, gnl|oryCun1|scaffold_165620 (23383-23098) | |
| 90-399, gnl|panTro1|chr10 (7401097-7401381) | |
| 90-399, gnl|panTro1|chr21 (17380139-17380500) | |
| 90-399, gnl|rheMac2|chr10 (50927216-50927577) | |
| 90-399, gnl|rheMac2|chr11 (7067434-7067719) | |
| 90-399, gnl|rn3|chr20 (661428-661713) | |
| 90-399, gnl|rn3|chr3 (132285272-132285625) | |
| 90-399, gnl|tetNig1|chr1 (8203688-8203406) | |
| 90-399, gnl|tetNig1|chr1 (8203703-8203374) | |
| 90-399, gnl|xenTro1|scaffold_117 (913212-913501) | |
| 90-399, gnl|xenTro1|scaffold_521 (594217-593870) |
| Expressed library(ies): 51 entry(ies) | More info |
| Expressed library(ies): 51 entry(ies) | Help | Less info |
| nlu (4.21698) | |
| ece (2.52236) | |
| ebs (2.01112) | |
| hyp (1.99971) | |
| ecc (1.9556) | |
| eep (1.83846) | |
| nco (1.77907) | |
| ese (1.51803) | |
| med (1.51128) | |
| csp (1.45068) | |
| clu (1.43575) | |
| jej (1.28598) | |
| nje (1.16144) | |
| nep (1.10355) | |
| fce (1.08637) | |
| eru (1.08043) | |
| cag (1.05836) | |
| cov (1.05722) | |
| eje (0.889504) | |
| ill (0.877963) | |
| fhi (0.847889) | |
| cly (0.844493) | |
| jca (0.797721) | |
| ute (0.796707) | |
| fty (0.703359) | |
| mcp (0.682594) | |
| ctl (0.612276) | |
| col (0.585023) | |
| lnt (0.569233) | |
| nca (0.547495) | |
| nmm (0.531209) | |
| fbs (0.526039) | |
| duo (0.518403) | |
| eli (0.455443) | |
| pty (0.428143) | |
| fli (0.405762) | |
| nbm (0.397298) | |
| elu (0.385356) | |
| cbr (0.383926) | |
| ton (0.351) | |
| eye (0.341006) | |
| cty (0.31224) | |
| cga (0.279096) | |
| mgp (0.230681) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| cli (0.152812) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| pgl (0.118483) |
| Expressed library(ies): 51 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (4.21698) | |
| ece (2.52236) | |
| ebs (2.01112) | |
| hyp (1.99971) | |
| ecc (1.9556) | |
| eep (1.83846) | |
| nco (1.77907) | |
| ese (1.51803) | |
| med (1.51128) | |
| csp (1.45068) | |
| clu (1.43575) | |
| jej (1.28598) | |
| nje (1.16144) | |
| nep (1.10355) | |
| fce (1.08637) | |
| eru (1.08043) | |
| cag (1.05836) | |
| cov (1.05722) | |
| eje (0.889504) | |
| ill (0.877963) | |
| fhi (0.847889) | |
| cly (0.844493) | |
| jca (0.797721) | |
| ute (0.796707) | |
| fty (0.703359) | |
| mcp (0.682594) | |
| ctl (0.612276) | |
| col (0.585023) | |
| lnt (0.569233) | |
| nca (0.547495) | |
| nmm (0.531209) | |
| fbs (0.526039) | |
| duo (0.518403) | |
| eli (0.455443) | |
| pty (0.428143) | |
| fli (0.405762) | |
| nbm (0.397298) | |
| elu (0.385356) | |
| cbr (0.383926) | |
| ton (0.351) | |
| eye (0.341006) | |
| cty (0.31224) | |
| cga (0.279096) | |
| mgp (0.230681) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| cli (0.152812) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| pgl (0.118483) |