Non-Coding RNA Search

Ss1.1-recc2818c_k23.5

Sequence:


               
               TGCTGAGCTCTGTGCTCCACGCGCGGACCAAGTGGCTGAAGGAGGGCGGTCTTCTTCTGC
CGGCTTCCGCCGAGCTCTTCGTGGCGCCCATTTGCGACCAGATGCTGGAGTTGCGTCTAA
GCTTCTGGAGCCAGATGAAGCAGCTCTACGGGGTGGACATGAGCTGCCTGGAGAGCTTCG
CCACGCGCTGCCTCATGGGCCACTCAGAAATCGTGGTGCAAGGCCTGTCTGGCGAGGATG
TGCTGGCCCGGCCGCAGTGCTTTGCTCAGTTGGACCTGGCCCGCGCGGGTCTGGAGCAGG
AGCTGGAGGCAGGGGTGGGCGGGCGCTTCCGCTTCAGCAGCTACGGCTCGGCTCACATGC
ACGGCTTTGCCATCTGGTTCCAGGTGACCTTCCCCAGTGGGGACTTGGAGAAACCCCTGG
TGCTGTCCACCTCGCCTTTTCACCCGGTCACGCACTGGAAGCAGGCACTCCTCTACCTGA
ACGAGCCCGTGCAAGTGGAGCAAGATACGGACGTTTCCGGAGAGATTACGCTCCTGCCCT
CCCAGGACAACCACCGTCACCTGCGCGTGCTGCTGCGCTACAAAGTGGGCGACCAGGAGG
AAAAGACCAAAGACTTTGCCATGGAGGACTGAGCGTGGCCTTTTCTCCCAGCTACCTTCC
GAGGCGGCCAGACCTGCTCGGTAGAGGCGGAGGGGGGTCGGAGGAGAAAGGCAGATCTCT
CCTGCAAGTAGGGGGCATTATCTTCTGTCTCCCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTGAGCTCTGTGCTCCACGCGCGGACCAAGTGGCTGAAGGAGGGCGGTCTTCTTCTGC
CGGCTTCCGCCGAGCTCTTCGTGGCGCCCATTTGCGACCAGATGCTGGAGTTGCGTCTAA
GCTTCTGGAGCCAGATGAAGCAGCTCTACGGGGTGGACATGAGCTGCCTGGAGAGCTTCG
CCACGCGCTGCCTCATGGGCCACTCAGAAATCGTGGTGCAAGGCCTGTCTGGCGAGGATG
TGCTGGCCCGGCCGCAGTGCTTTGCTCAGTTGGACCTGGCCCGCGCGGGTCTGGAGCAGG
AGCTGGAGGCAGGGGTGGGCGGGCGCTTCCGCTTCAGCAGCTACGGCTCGGCTCACATGC
ACGGCTTTGCCATCTGGTTCCAGGTGACCTTCCCCAGTGGGGACTTGGAGAAACCCCTGG
TGCTGTCCACCTCGCCTTTTCACCCGGTCACGCACTGGAAGCAGGCACTCCTCTACCTGA
ACGAGCCCGTGCAAGTGGAGCAAGATACGGACGTTTCCGGAGAGATTACGCTCCTGCCCT
CCCAGGACAACCACCGTCACCTGCGCGTGCTGCTGCGCTACAAAGTGGGCGACCAGGAGG
AAAAGACCAAAGACTTTGCCATGGAGGACTGAGCGTGGCCTTTTCTCCCAGCTACCTTCC
GAGGCGGCCAGACCTGCTCGGTAGAGGCGGAGGGGGGTCGGAGGAGAAAGGCAGATCTCT
CCTGCAAGTAGGGGGCATTATCTTCTGTCTCCCTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|26352586|dbj|BAC39923.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|26352586|dbj|BAC39923.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               359-478, - strand, RNAz p=0.505841

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               359-478, - strand, RNAz p=0.505841

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-756, gnl|bosTau2|chr3 (33086302-33087059)
               

               
               1-756, gnl|Hg17|chr1 (107311876-107312625)
               

               
               1-756, gnl|Mm7|chr3 (110068754-110068033)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-756, gnl|bosTau2|chr3 (33086302-33087059)
               

               
               1-756, gnl|Hg17|chr1 (107311876-107312625)
               

               
               1-756, gnl|Mm7|chr3 (110068754-110068033)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               eru (0.120048)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)
               

               
               ecc (0.115035)

	1-756, gnl\|bosTau2\|chr3 (33086302-33087059)
	1-756, gnl\|Hg17\|chr1 (107311876-107312625)
	1-756, gnl\|Mm7\|chr3 (110068754-110068033)