Non-Coding RNA Search

Ss1.1-recc2818c_l20.5

Sequence:


               
               GAGCTGCACCTCGGGTCACTGGAGAGGTACTGCACTGACAGCAATGGCAGCCACGGCGTT
GGCGGTGCGCTCGCGGATCGGCGCGTGGAGTGTCTGGGCCATGCAAAGCCGAGGCTTCAG
CTCTGATACGCCAGAGGGTGTCCGCTCCGGTGCGGGTGCAGTCCGGGACGCCGGTGGAGC
CTTCGGAAAGAAAGAGCAGGCTGATGAGGAACGATACTTCCGAGCTCGGGCTAGAGAACA
ACTGGCAGCCTTGAAGAAACATCATGAAAATGAGATCTCTCATCACGTGAAGGAGATTGA
GCGCCTGCAGAAAGAAATTGAGCGGCACAAGCAGTCAATCAAGAAACTGAAAAATGATGA
TGATGATTAAGTGCACACAGTTACCCATAAAATGGGCACCTGTTATTGCCCACTTCTATG
TAGCCATCATTCTGGTTTTAATTAATAGCTATCTGTGTGCTGCCAACAAATTACAATAAA
TTGTATCAGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCTGCACCTCGGGTCACTGGAGAGGTACTGCACTGACAGCAATGGCAGCCACGGCGTT
GGCGGTGCGCTCGCGGATCGGCGCGTGGAGTGTCTGGGCCATGCAAAGCCGAGGCTTCAG
CTCTGATACGCCAGAGGGTGTCCGCTCCGGTGCGGGTGCAGTCCGGGACGCCGGTGGAGC
CTTCGGAAAGAAAGAGCAGGCTGATGAGGAACGATACTTCCGAGCTCGGGCTAGAGAACA
ACTGGCAGCCTTGAAGAAACATCATGAAAATGAGATCTCTCATCACGTGAAGGAGATTGA
GCGCCTGCAGAAAGAAATTGAGCGGCACAAGCAGTCAATCAAGAAACTGAAAAATGATGA
TGATGATTAAGTGCACACAGTTACCCATAAAATGGGCACCTGTTATTGCCCACTTCTATG
TAGCCATCATTCTGGTTTTAATTAATAGCTATCTGTGTGCTGCCAACAAATTACAATAAA
TTGTATCAGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               ATIF1_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               ATIF1_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               372-489, - strand, RNAz p=0.996753

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               372-489, - strand, RNAz p=0.996753

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               13-507, gnl|bosTau2|chr25 (36871754-36872244)
               

               
               13-507, gnl|Hg17|chr1 (28246815-28248753)
               

               
               13-507, gnl|Mm7|chr12 (114330020-114330487)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-507, gnl|bosTau2|chr25 (36871754-36872244)
               

               
               13-507, gnl|Hg17|chr1 (28246815-28248753)
               

               
               13-507, gnl|Mm7|chr12 (114330020-114330487)

Expressed library(ies): 61 entry(ies)

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Expressed library(ies): 61 entry(ies)

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               che (2.72628)
               

               
               nms (2.5663)
               

               
               hlv (1.53182)
               

               
               cbe (1.43541)
               

               
               cje (1.15664)
               

               
               mas (1.05152)
               

               
               eli (0.910885)
               

               
               ton (0.877501)
               

               
               fbs (0.876732)
               

               
               amn (0.835422)
               

               
               nca (0.821243)
               

               
               fce (0.814775)
               

               
               fty (0.703359)
               

               
               duo (0.691204)
               

               
               cki (0.660939)
               

               
               hea (0.613497)
               

               
               bfe (0.599431)
               

               
               fcc (0.593354)
               

               
               fat (0.58971)
               

               
               col (0.585023)
               

               
               ecc (0.575175)
               

               
               spc (0.566829)
               

               
               cst (0.560146)
               

               
               nep (0.551775)
               

               
               ssp (0.542079)
               

               
               nbm (0.496623)
               

               
               eje (0.494169)
               

               
               ece (0.45861)
               

               
               isp (0.451128)
               

               
               fli (0.405762)
               

               
               cov (0.396458)
               

               
               jej (0.395687)
               

               
               aor (0.390549)
               

               
               elu (0.385356)
               

               
               sag (0.36543)
               

               
               ebs (0.354904)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               eye (0.341006)
               

               
               fhi (0.339155)
               

               
               vin (0.332557)
               

               
               nco (0.323468)
               

               
               cli (0.305623)
               

               
               sme (0.305437)
               

               
               pty (0.285429)
               

               
               nmm (0.265604)
               

               
               med (0.232504)
               

               
               jca (0.22792)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)

Expressed library(ies): 61 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (2.72628)
               

               
               nms (2.5663)
               

               
               hlv (1.53182)
               

               
               cbe (1.43541)
               

               
               cje (1.15664)
               

               
               mas (1.05152)
               

               
               eli (0.910885)
               

               
               ton (0.877501)
               

               
               fbs (0.876732)
               

               
               amn (0.835422)
               

               
               nca (0.821243)
               

               
               fce (0.814775)
               

               
               fty (0.703359)
               

               
               duo (0.691204)
               

               
               cki (0.660939)
               

               
               hea (0.613497)
               

               
               bfe (0.599431)
               

               
               fcc (0.593354)
               

               
               fat (0.58971)
               

               
               col (0.585023)
               

               
               ecc (0.575175)
               

               
               spc (0.566829)
               

               
               cst (0.560146)
               

               
               nep (0.551775)
               

               
               ssp (0.542079)
               

               
               nbm (0.496623)
               

               
               eje (0.494169)
               

               
               ece (0.45861)
               

               
               isp (0.451128)
               

               
               fli (0.405762)
               

               
               cov (0.396458)
               

               
               jej (0.395687)
               

               
               aor (0.390549)
               

               
               elu (0.385356)
               

               
               sag (0.36543)
               

               
               ebs (0.354904)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               eye (0.341006)
               

               
               fhi (0.339155)
               

               
               vin (0.332557)
               

               
               nco (0.323468)
               

               
               cli (0.305623)
               

               
               sme (0.305437)
               

               
               pty (0.285429)
               

               
               nmm (0.265604)
               

               
               med (0.232504)
               

               
               jca (0.22792)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)

	13-507, gnl\|bosTau2\|chr25 (36871754-36872244)
	13-507, gnl\|Hg17\|chr1 (28246815-28248753)
	13-507, gnl\|Mm7\|chr12 (114330020-114330487)

	che (2.72628)
	nms (2.5663)
	hlv (1.53182)
	cbe (1.43541)
	cje (1.15664)
	mas (1.05152)
	eli (0.910885)
	ton (0.877501)
	fbs (0.876732)
	amn (0.835422)
	nca (0.821243)
	fce (0.814775)
	fty (0.703359)
	duo (0.691204)
	cki (0.660939)
	hea (0.613497)
	bfe (0.599431)
	fcc (0.593354)
	fat (0.58971)
	col (0.585023)
	ecc (0.575175)
	spc (0.566829)
	cst (0.560146)
	nep (0.551775)
	ssp (0.542079)
	nbm (0.496623)
	eje (0.494169)
	ece (0.45861)
	isp (0.451128)
	fli (0.405762)
	cov (0.396458)
	jej (0.395687)
	aor (0.390549)
	elu (0.385356)
	sag (0.36543)
	ebs (0.354904)
	sin (0.349895)
	rec (0.346141)
	eye (0.341006)
	fhi (0.339155)
	vin (0.332557)
	nco (0.323468)
	cli (0.305623)
	sme (0.305437)
	pty (0.285429)
	nmm (0.265604)
	med (0.232504)
	jca (0.22792)
	nlu (0.191681)
	mcp (0.170648)
	cut (0.169924)
	csp (0.161186)
	fco (0.157208)
	cag (0.151194)
	hyp (0.142837)
	csk (0.140746)
	lyg (0.133103)
	ute (0.132784)
	bla (0.124347)
	cly (0.120642)
	pgl (0.118483)