Ss1.1-recc2818c_n6.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACATTTGCGATTGGCATGGAAGATAGTCCAGATTTACTAGCTGCTAGAAAGGTGGCAGAT CATATTGGGAGTGAACACCATGAAGTCCTCTTTAACTCTGAGGAAGGCATTCAGGTCCTG GATGAAGTCATATTCTCCCTGGAAACGTACGATATTACAACAGTTCGTGCTTCAGTAGGT ATGTACCTGATTTCCAAGTACATTCGGAAGAACACGGACAGTGTGGTGATCTTCTCTGGA GAAGGTTCAGATGAACTTACGCAGGGTTACATATATTTTCACAAGGCTCCTTCGCCTGAG AAAGCCGAGGAGGAGAGTGAGAGGCTTCTGAAGGAACTCTATTTGTTTGATGTTCTCCGT GCAGATCGAACTACTGCTGCCCATGGCCTTGAATTGAGAGTCCCCTTCTTGGATCATCGG TTTTCTTCCTACTATTTGTCTCTGCCAGCAGATATGAGAATCCCCAAGAACGGGATAGAA AAACATCTCCTGAGAGAGACATTTGAGGACTCCAATCTGATACCTAAAGAAATTCTCTGG CGACCGAAAGAAGCCTTCAGTGATGGAATAACCTCAGTTAAGAATTCCTGGTTTAGGATT TTACAGGAATATATTGAACATCAGGTTGATGATGCAATGATGGCAACTGCAGCCCAGAAA TTTCCCTTCAATACTCCAAAAACGAAGGAAGGCTATTACTACCGTCAGATCTTTGAACGC CACTACCCAGGCCGGGCCGACTGGCTGACCCATTACTGGATGCCCAGGTGGATCAGTGCC TCTGATCCTTCTGCCCGCACTCTGTCCCATTATAAGGCTTCTGCCAAAGCTTAGGTGTGA AAGCAAACACTTCTCGCTGTGCAACAAGTAAACACTTCTCGCTGTGCAGGTAGGGGGCTT AGAGGCAGGAAGGGTCCACCATACAGGCTTCCTTGGATGTGAAAAAAATTAAAGGCTTAA ATCAGAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACATTTGCGATTGGCATGGAAGATAGTCCAGATTTACTAGCTGCTAGAAAGGTGGCAGAT CATATTGGGAGTGAACACCATGAAGTCCTCTTTAACTCTGAGGAAGGCATTCAGGTCCTG GATGAAGTCATATTCTCCCTGGAAACGTACGATATTACAACAGTTCGTGCTTCAGTAGGT ATGTACCTGATTTCCAAGTACATTCGGAAGAACACGGACAGTGTGGTGATCTTCTCTGGA GAAGGTTCAGATGAACTTACGCAGGGTTACATATATTTTCACAAGGCTCCTTCGCCTGAG AAAGCCGAGGAGGAGAGTGAGAGGCTTCTGAAGGAACTCTATTTGTTTGATGTTCTCCGT GCAGATCGAACTACTGCTGCCCATGGCCTTGAATTGAGAGTCCCCTTCTTGGATCATCGG TTTTCTTCCTACTATTTGTCTCTGCCAGCAGATATGAGAATCCCCAAGAACGGGATAGAA AAACATCTCCTGAGAGAGACATTTGAGGACTCCAATCTGATACCTAAAGAAATTCTCTGG CGACCGAAAGAAGCCTTCAGTGATGGAATAACCTCAGTTAAGAATTCCTGGTTTAGGATT TTACAGGAATATATTGAACATCAGGTTGATGATGCAATGATGGCAACTGCAGCCCAGAAA TTTCCCTTCAATACTCCAAAAACGAAGGAAGGCTATTACTACCGTCAGATCTTTGAACGC CACTACCCAGGCCGGGCCGACTGGCTGACCCATTACTGGATGCCCAGGTGGATCAGTGCC TCTGATCCTTCTGCCCGCACTCTGTCCCATTATAAGGCTTCTGCCAAAGCTTAGGTGTGA AAGCAAACACTTCTCGCTGTGCAACAAGTAAACACTTCTCGCTGTGCAGGTAGGGGGCTT AGAGGCAGGAAGGGTCCACCATACAGGCTTCCTTGGATGTGAAAAAAATTAAAGGCTTAA ATCAGAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 5-409, gnl|bosTau2|chr9 (53942771-53943172) | |
| 5-409, gnl|Hg17|chr18 (11736777-11737184) | |
| 50-181, gnl|bosTau2|chr4 (4120777-4120908) | |
| 50-181, gnl|Hg17|chr7 (97130781-97130650) | |
| 50-181, gnl|Mm7|chr6 (7633099-7632968) | |
| 284-386, gnl|bosTau2|chr4 (4122791-4122893) | |
| 284-386, gnl|canFam2|chr14 (25669005-25669149) | |
| 284-386, gnl|canFam2|chr14 (25669008-25669147) | |
| 284-386, gnl|danRer3|chr19 (29907450-29907576) | |
| 284-386, gnl|danRer3|chr19 (29907458-29907576) | |
| 284-386, gnl|dasNov1|scaffold_6885 (6722-6866) | |
| 284-386, gnl|dasNov1|scaffold_6885 (6725-6864) | |
| 284-386, gnl|echTel1|scaffold_319716 (7405-7519) | |
| 284-386, gnl|echTel1|scaffold_319716 (7405-7517) | |
| 284-386, gnl|fr1|chrUn (39774868-39774763) | |
| 284-386, gnl|fr1|chrUn (39774869-39774762) | |
| 284-386, gnl|galGal2|chr2 (23963088-23963207) | |
| 284-386, gnl|galGal2|chr2 (23963064-23963196) | |
| 284-386, gnl|hg17|chr7 (97128522-97128656) | |
| 284-386, gnl|Hg17|chr7 (97128645-97128543) | |
| 284-386, gnl|hg17|chr8 (47622106-47622236) | |
| 284-386, gnl|loxAfr1|scaffold_1886 (9215-9071) | |
| 284-386, gnl|loxAfr1|scaffold_1886 (9212-9073) | |
| 284-386, gnl|mm7|chr6 (7630096-7630232) | |
| 284-386, gnl|mm7|chr6 (7630099-7630230) | |
| 284-386, gnl|Mm7|chr6 (7630219-7630117) | |
| 284-386, gnl|monDom2|scaffold_270 (900-781) | |
| 284-386, gnl|oryCun1|scaffold_144657 (11413-11557) | |
| 284-386, gnl|oryCun1|scaffold_144657 (11416-11555) | |
| 284-386, gnl|panTro1|chr6 (98777904-98778043) | |
| 284-386, gnl|panTro1|chr6 (98777907-98778041) | |
| 284-386, gnl|rheMac2|chr3 (119428581-119428442) | |
| 284-386, gnl|rheMac2|chr3 (119428578-119428444) | |
| 284-386, gnl|rn3|chr4 (32879486-32879622) | |
| 284-386, gnl|rn3|chr4 (32879489-32879620) | |
| 284-386, gnl|tetNig1|chrUn_random (10382810-10382728) | |
| 284-386, gnl|tetNig1|chrUn_random (10382809-10382703) | |
| 284-386, gnl|xenTro1|scaffold_420 (348095-347988) | |
| 284-386, gnl|xenTro1|scaffold_420 (348102-347988) | |
| 580-982, gnl|bosTau2|chr18 (39958102-39958489) | |
| 580-982, gnl|Hg17|chr7 (97127061-97126112) | |
| 580-982, gnl|Mm7|chr6 (7628489-7628055) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-409, gnl|bosTau2|chr9 (53942771-53943172) | |
| 5-409, gnl|Hg17|chr18 (11736777-11737184) | |
| 50-181, gnl|bosTau2|chr4 (4120777-4120908) | |
| 50-181, gnl|Hg17|chr7 (97130781-97130650) | |
| 50-181, gnl|Mm7|chr6 (7633099-7632968) | |
| 284-386, gnl|bosTau2|chr4 (4122791-4122893) | |
| 284-386, gnl|canFam2|chr14 (25669005-25669149) | |
| 284-386, gnl|canFam2|chr14 (25669008-25669147) | |
| 284-386, gnl|danRer3|chr19 (29907450-29907576) | |
| 284-386, gnl|danRer3|chr19 (29907458-29907576) | |
| 284-386, gnl|dasNov1|scaffold_6885 (6722-6866) | |
| 284-386, gnl|dasNov1|scaffold_6885 (6725-6864) | |
| 284-386, gnl|echTel1|scaffold_319716 (7405-7519) | |
| 284-386, gnl|echTel1|scaffold_319716 (7405-7517) | |
| 284-386, gnl|fr1|chrUn (39774868-39774763) | |
| 284-386, gnl|fr1|chrUn (39774869-39774762) | |
| 284-386, gnl|galGal2|chr2 (23963088-23963207) | |
| 284-386, gnl|galGal2|chr2 (23963064-23963196) | |
| 284-386, gnl|hg17|chr7 (97128522-97128656) | |
| 284-386, gnl|Hg17|chr7 (97128645-97128543) | |
| 284-386, gnl|hg17|chr8 (47622106-47622236) | |
| 284-386, gnl|loxAfr1|scaffold_1886 (9215-9071) | |
| 284-386, gnl|loxAfr1|scaffold_1886 (9212-9073) | |
| 284-386, gnl|mm7|chr6 (7630096-7630232) | |
| 284-386, gnl|mm7|chr6 (7630099-7630230) | |
| 284-386, gnl|Mm7|chr6 (7630219-7630117) | |
| 284-386, gnl|monDom2|scaffold_270 (900-781) | |
| 284-386, gnl|oryCun1|scaffold_144657 (11413-11557) | |
| 284-386, gnl|oryCun1|scaffold_144657 (11416-11555) | |
| 284-386, gnl|panTro1|chr6 (98777904-98778043) | |
| 284-386, gnl|panTro1|chr6 (98777907-98778041) | |
| 284-386, gnl|rheMac2|chr3 (119428581-119428442) | |
| 284-386, gnl|rheMac2|chr3 (119428578-119428444) | |
| 284-386, gnl|rn3|chr4 (32879486-32879622) | |
| 284-386, gnl|rn3|chr4 (32879489-32879620) | |
| 284-386, gnl|tetNig1|chrUn_random (10382810-10382728) | |
| 284-386, gnl|tetNig1|chrUn_random (10382809-10382703) | |
| 284-386, gnl|xenTro1|scaffold_420 (348095-347988) | |
| 284-386, gnl|xenTro1|scaffold_420 (348102-347988) | |
| 580-982, gnl|bosTau2|chr18 (39958102-39958489) | |
| 580-982, gnl|Hg17|chr7 (97127061-97126112) | |
| 580-982, gnl|Mm7|chr6 (7628489-7628055) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| nbm (0.397298) | |
| ill (0.351185) | |
| duo (0.345602) | |
| sme (0.305437) | |
| cag (0.151194) | |
| ski (0.146735) | |
| pty (0.142714) | |
| sug (0.127291) | |
| thg (0.126791) | |
| ese (0.126502) | |
| cly (0.120642) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nbm (0.397298) | |
| ill (0.351185) | |
| duo (0.345602) | |
| sme (0.305437) | |
| cag (0.151194) | |
| ski (0.146735) | |
| pty (0.142714) | |
| sug (0.127291) | |
| thg (0.126791) | |
| ese (0.126502) | |
| cly (0.120642) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| eje (0.0988338) | |
| ldo (0.0970026) |