Non-Coding RNA Search

Ss1.1-recc2819c_a20.5

Sequence:


               
               CCCCTCCCCCATACTGCTTAGCCGCTGTGGCTCCTGGGGAAAGCCCCCGGAGGGACGCTC
CTCCTGGGGTGTGATGGCTGGTGGTGGAGGGAAAGGTTTGGCGCCCTATTTTCTTCTCTG
CCTTTCTCCTTGCGAAGTATACTTACGTAAGATGGCAGGTCCCCGATGTGGGAGTCGAAA
TCCACCGTGAGTCCGAAAGGCCACTGGACTGAGTAGAAAGGAGAGTCTGGTTCCTGGGCC
ACAGAATGGAGGAGTATCGAGTGTTTTTTGAGAAAACCTAAATTTCAGATCCAAATAGTG
TGATATTCCCTAAGTTTCGAAGTACGCGTATAAGGCGAGGTAACACCCGGGAACACTTTT
CAATAATCTAAAAGCTACAAGAAACCAAGGAGTATATATCTGAATTTTGAAGGCCATTTT
CATACTTCCTATTCCTTCCGTCTTAACTTTCTTCCCGTTTCTACTCTGTATATCCTACAA
GAATGTTAATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCTCCCCCATACTGCTTAGCCGCTGTGGCTCCTGGGGAAAGCCCCCGGAGGGACGCTC
CTCCTGGGGTGTGATGGCTGGTGGTGGAGGGAAAGGTTTGGCGCCCTATTTTCTTCTCTG
CCTTTCTCCTTGCGAAGTATACTTACGTAAGATGGCAGGTCCCCGATGTGGGAGTCGAAA
TCCACCGTGAGTCCGAAAGGCCACTGGACTGAGTAGAAAGGAGAGTCTGGTTCCTGGGCC
ACAGAATGGAGGAGTATCGAGTGTTTTTTGAGAAAACCTAAATTTCAGATCCAAATAGTG
TGATATTCCCTAAGTTTCGAAGTACGCGTATAAGGCGAGGTAACACCCGGGAACACTTTT
CAATAATCTAAAAGCTACAAGAAACCAAGGAGTATATATCTGAATTTTGAAGGCCATTTT
CATACTTCCTATTCCTTCCGTCTTAACTTTCTTCCCGTTTCTACTCTGTATATCCTACAA
GAATGTTAATCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               36-231, + strand, RNAz p=0.796001

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               36-231, + strand, RNAz p=0.796001

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-489, gnl|bosTau2|chr4 (22178167-22177670)
               

               
               1-489, gnl|Hg17|chr7 (104247035-104246543)
               

               
               1-489, gnl|Mm7|chr5 (22473406-22472926)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-489, gnl|bosTau2|chr4 (22178167-22177670)
               

               
               1-489, gnl|Hg17|chr7 (104247035-104246543)
               

               
               1-489, gnl|Mm7|chr5 (22473406-22472926)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               pro (0.512033)
               

               
               fty (0.17584)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               ecc (0.115035)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               fty (0.17584)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               ecc (0.115035)

	1-489, gnl\|bosTau2\|chr4 (22178167-22177670)
	1-489, gnl\|Hg17\|chr7 (104247035-104246543)
	1-489, gnl\|Mm7\|chr5 (22473406-22472926)

	pro (0.512033)
	fty (0.17584)
	pla (0.133672)
	ova (0.129132)
	ecc (0.115035)